miRNA display CGI


Results 1 - 20 of 503 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25276 3' -57.6 NC_005336.1 + 90623 0.65 0.83295
Target:  5'- uGCAGCAgaccuugcccaggcUGCGCGCGAUgUUCGUuuuGCu -3'
miRNA:   3'- uCGUCGU--------------GCGCGUGCUAgAGGCG---UGu -5'
25276 3' -57.6 NC_005336.1 + 5778 0.65 0.832115
Target:  5'- aGGCGGC-CGCGCACcgcacccaCGCGCAc -3'
miRNA:   3'- -UCGUCGuGCGCGUGcuagag--GCGUGU- -5'
25276 3' -57.6 NC_005336.1 + 123469 0.66 0.827067
Target:  5'- uAGCGGCgagGCGCGCAaGAcgCcgCUGCACGu -3'
miRNA:   3'- -UCGUCG---UGCGCGUgCUa-Ga-GGCGUGU- -5'
25276 3' -57.6 NC_005336.1 + 77826 0.66 0.827067
Target:  5'- cGCGGaCGCGCGC-CGG-CUgUGUACAa -3'
miRNA:   3'- uCGUC-GUGCGCGuGCUaGAgGCGUGU- -5'
25276 3' -57.6 NC_005336.1 + 70965 0.66 0.827067
Target:  5'- uGCAccuGCG-GCGCGCGGUCUuCUGCAg- -3'
miRNA:   3'- uCGU---CGUgCGCGUGCUAGA-GGCGUgu -5'
25276 3' -57.6 NC_005336.1 + 74580 0.66 0.827067
Target:  5'- gGGCAcGCGCGCGCGCagcuugccCUCCuccuuagcgaGCGCAg -3'
miRNA:   3'- -UCGU-CGUGCGCGUGcua-----GAGG----------CGUGU- -5'
25276 3' -57.6 NC_005336.1 + 95285 0.66 0.827067
Target:  5'- gAGCAGaaaccgcuCGUGCGacaGGUCgcggCCGCACGu -3'
miRNA:   3'- -UCGUCgu------GCGCGUg--CUAGa---GGCGUGU- -5'
25276 3' -57.6 NC_005336.1 + 35571 0.66 0.827067
Target:  5'- cGCGGUACGUGUACuug--CCGCGCc -3'
miRNA:   3'- uCGUCGUGCGCGUGcuagaGGCGUGu -5'
25276 3' -57.6 NC_005336.1 + 96488 0.66 0.827067
Target:  5'- cGUAGgG-GUGCAUGAUCUgcauggCCGCGCAg -3'
miRNA:   3'- uCGUCgUgCGCGUGCUAGA------GGCGUGU- -5'
25276 3' -57.6 NC_005336.1 + 82585 0.66 0.827067
Target:  5'- cAGCAGCugGUaguuGCugGGUCgcaCGCGg- -3'
miRNA:   3'- -UCGUCGugCG----CGugCUAGag-GCGUgu -5'
25276 3' -57.6 NC_005336.1 + 111338 0.66 0.827067
Target:  5'- gAGCAGgAUGUGCuuGAagcgCCGCACGa -3'
miRNA:   3'- -UCGUCgUGCGCGugCUaga-GGCGUGU- -5'
25276 3' -57.6 NC_005336.1 + 71691 0.66 0.827067
Target:  5'- cGCAGC-CGCGCcguGAUCgggCCGC-CGg -3'
miRNA:   3'- uCGUCGuGCGCGug-CUAGa--GGCGuGU- -5'
25276 3' -57.6 NC_005336.1 + 64025 0.66 0.827067
Target:  5'- gAGCGGCACcguGgGCAUGcUCacgCUGCGCAa -3'
miRNA:   3'- -UCGUCGUG---CgCGUGCuAGa--GGCGUGU- -5'
25276 3' -57.6 NC_005336.1 + 9000 0.66 0.827067
Target:  5'- cGCGGCGCGCGUA-GcUCgCCGCGa- -3'
miRNA:   3'- uCGUCGUGCGCGUgCuAGaGGCGUgu -5'
25276 3' -57.6 NC_005336.1 + 40304 0.66 0.827067
Target:  5'- -cCAGCgGCGCGC-CGA-C-CCGCGCAg -3'
miRNA:   3'- ucGUCG-UGCGCGuGCUaGaGGCGUGU- -5'
25276 3' -57.6 NC_005336.1 + 14182 0.66 0.827067
Target:  5'- uGCcGUACGcCGCGCGuccguUCUCCaCACAc -3'
miRNA:   3'- uCGuCGUGC-GCGUGCu----AGAGGcGUGU- -5'
25276 3' -57.6 NC_005336.1 + 117922 0.66 0.827067
Target:  5'- gAGCGuGCGCGCGgGcCGGUCgCgGUACAc -3'
miRNA:   3'- -UCGU-CGUGCGCgU-GCUAGaGgCGUGU- -5'
25276 3' -57.6 NC_005336.1 + 99021 0.66 0.827067
Target:  5'- gAGCGGCugGUggccgggcucaaGCGCGA-CgugCUGCACGc -3'
miRNA:   3'- -UCGUCGugCG------------CGUGCUaGa--GGCGUGU- -5'
25276 3' -57.6 NC_005336.1 + 91742 0.66 0.827067
Target:  5'- cAGCcgGGCGCGaaaGC-CGAUCUCgGCGgGg -3'
miRNA:   3'- -UCG--UCGUGCg--CGuGCUAGAGgCGUgU- -5'
25276 3' -57.6 NC_005336.1 + 62787 0.66 0.827067
Target:  5'- cGCGGauCGCGCGgcCGCGGUCU-CGCACc -3'
miRNA:   3'- uCGUC--GUGCGC--GUGCUAGAgGCGUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.