miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2528 3' -57 NC_001454.1 + 25487 0.66 0.470752
Target:  5'- uGGCUuaGUGCCggcccccaCAUgAUugGGCGGGUa -3'
miRNA:   3'- -UCGGcgCACGG--------GUAgUAugUCGUCCG- -5'
2528 3' -57 NC_001454.1 + 32246 0.67 0.420206
Target:  5'- gGGgaGCGUGUuuGUCAga-GGUAGGCa -3'
miRNA:   3'- -UCggCGCACGggUAGUaugUCGUCCG- -5'
2528 3' -57 NC_001454.1 + 17500 0.67 0.382218
Target:  5'- uGCCaGUuaGCCCcgCGaggGCGGCGGGCg -3'
miRNA:   3'- uCGG-CGcaCGGGuaGUa--UGUCGUCCG- -5'
2528 3' -57 NC_001454.1 + 15163 0.67 0.373085
Target:  5'- gGGCC-CGUcgucaggccGCCCGUCAggccGCGGC-GGCu -3'
miRNA:   3'- -UCGGcGCA---------CGGGUAGUa---UGUCGuCCG- -5'
2528 3' -57 NC_001454.1 + 11287 0.68 0.346587
Target:  5'- uGCCG-GUGCCCGUUAgagcccgacGCAGCuGuGCa -3'
miRNA:   3'- uCGGCgCACGGGUAGUa--------UGUCGuC-CG- -5'
2528 3' -57 NC_001454.1 + 6015 0.68 0.338059
Target:  5'- cGCCGCGcagggGCUCAUUGgucCAGCAaaGGCg -3'
miRNA:   3'- uCGGCGCa----CGGGUAGUau-GUCGU--CCG- -5'
2528 3' -57 NC_001454.1 + 14997 0.72 0.199233
Target:  5'- gGGCCGCGUGUag--CGUugGGCAucGGCu -3'
miRNA:   3'- -UCGGCGCACGgguaGUAugUCGU--CCG- -5'
2528 3' -57 NC_001454.1 + 20514 0.72 0.193793
Target:  5'- aAGCUgGCGUGUgCCAUUGUuaacACGGCGGGCc -3'
miRNA:   3'- -UCGG-CGCACG-GGUAGUA----UGUCGUCCG- -5'
2528 3' -57 NC_001454.1 + 8274 0.72 0.173317
Target:  5'- cGCCGCGUGUCg--CGUACGccagucaacuGCGGGCg -3'
miRNA:   3'- uCGGCGCACGGguaGUAUGU----------CGUCCG- -5'
2528 3' -57 NC_001454.1 + 17215 0.75 0.116102
Target:  5'- -cCCGCGaGCCCcccUCGUACgAGCAGGCu -3'
miRNA:   3'- ucGGCGCaCGGGu--AGUAUG-UCGUCCG- -5'
2528 3' -57 NC_001454.1 + 32146 1.12 0.000186
Target:  5'- uAGCCGCGUGCCCAUCAUACAGCAGGCg -3'
miRNA:   3'- -UCGGCGCACGGGUAGUAUGUCGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.