miRNA display CGI


Results 1 - 20 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25289 5' -57 NC_005336.1 + 82747 0.66 0.85812
Target:  5'- -aCGGgcGUGCCGCCGCCgAGcAGcGCg -3'
miRNA:   3'- ucGUCuaCACGGCGGCGG-UCaUC-UGg -5'
25289 5' -57 NC_005336.1 + 70484 0.66 0.85812
Target:  5'- cGCAuAUG-GgCGCCGCCAuuuaGGACCa -3'
miRNA:   3'- uCGUcUACaCgGCGGCGGUca--UCUGG- -5'
25289 5' -57 NC_005336.1 + 43753 0.66 0.85812
Target:  5'- cGCGGuucUGUcuGCUGCCGaCCA-UGGACCc -3'
miRNA:   3'- uCGUCu--ACA--CGGCGGC-GGUcAUCUGG- -5'
25289 5' -57 NC_005336.1 + 105236 0.66 0.85812
Target:  5'- cGCAGAUG-GCgaCGCucauccuggCGCCGGUGGugUu -3'
miRNA:   3'- uCGUCUACaCG--GCG---------GCGGUCAUCugG- -5'
25289 5' -57 NC_005336.1 + 96619 0.66 0.85812
Target:  5'- cGGCGGGgaagcgcucGUCGCCGCCAGgcucGugCg -3'
miRNA:   3'- -UCGUCUaca------CGGCGGCGGUCau--CugG- -5'
25289 5' -57 NC_005336.1 + 65495 0.66 0.85812
Target:  5'- cGCuGAUGUGCUGCaGCgGGUcgcggaAGACg -3'
miRNA:   3'- uCGuCUACACGGCGgCGgUCA------UCUGg -5'
25289 5' -57 NC_005336.1 + 95740 0.66 0.85812
Target:  5'- cGGUAGAUGcccUCGUCGCCGG-AGGCg -3'
miRNA:   3'- -UCGUCUACac-GGCGGCGGUCaUCUGg -5'
25289 5' -57 NC_005336.1 + 134152 0.66 0.85579
Target:  5'- cGCGGAcagGCuCGCCGUCGcgcgcgagcugggcGUGGACCc -3'
miRNA:   3'- uCGUCUacaCG-GCGGCGGU--------------CAUCUGG- -5'
25289 5' -57 NC_005336.1 + 60026 0.66 0.853442
Target:  5'- gAGguGGUGUGCCGCgcggCGCugcaucuccuucggaCAcGUGGACUu -3'
miRNA:   3'- -UCguCUACACGGCG----GCG---------------GU-CAUCUGG- -5'
25289 5' -57 NC_005336.1 + 100952 0.66 0.850282
Target:  5'- cGCGGAga-GCCGCCGCaccgCGG-AGAUCu -3'
miRNA:   3'- uCGUCUacaCGGCGGCG----GUCaUCUGG- -5'
25289 5' -57 NC_005336.1 + 93555 0.66 0.850282
Target:  5'- cGGCGuGAaGUGCCGgUGCCAGacuuGCCg -3'
miRNA:   3'- -UCGU-CUaCACGGCgGCGGUCauc-UGG- -5'
25289 5' -57 NC_005336.1 + 130041 0.66 0.850282
Target:  5'- cGCuGGUGggGCCGCUGCUGGcu-GCCg -3'
miRNA:   3'- uCGuCUACa-CGGCGGCGGUCaucUGG- -5'
25289 5' -57 NC_005336.1 + 89012 0.66 0.850282
Target:  5'- uGCAGcUGcGCuccgaCGCCGCgCAGUGGAgCg -3'
miRNA:   3'- uCGUCuACaCG-----GCGGCG-GUCAUCUgG- -5'
25289 5' -57 NC_005336.1 + 41619 0.66 0.850282
Target:  5'- gAGCAGGUGcGCgaGCC-CCAG--GACCg -3'
miRNA:   3'- -UCGUCUACaCGg-CGGcGGUCauCUGG- -5'
25289 5' -57 NC_005336.1 + 87028 0.66 0.850282
Target:  5'- uGCAGAUGcGCUGCaGgCGGUGGAa- -3'
miRNA:   3'- uCGUCUACaCGGCGgCgGUCAUCUgg -5'
25289 5' -57 NC_005336.1 + 86035 0.66 0.850282
Target:  5'- cGCuGGccGUGCUGCCuuucGUCAGUcgaGGACCa -3'
miRNA:   3'- uCG-UCuaCACGGCGG----CGGUCA---UCUGG- -5'
25289 5' -57 NC_005336.1 + 101511 0.66 0.850282
Target:  5'- cGCAGcgc-GuuGCCGCCGGcgacgAGGCCc -3'
miRNA:   3'- uCGUCuacaCggCGGCGGUCa----UCUGG- -5'
25289 5' -57 NC_005336.1 + 49854 0.66 0.849488
Target:  5'- aGGCAGAUGUcguccagaaagauGCU-CCGCUGGUAGAg- -3'
miRNA:   3'- -UCGUCUACA-------------CGGcGGCGGUCAUCUgg -5'
25289 5' -57 NC_005336.1 + 126389 0.66 0.845484
Target:  5'- cGCGGAgcuaaccauccCCGCCGCCGGcGGGCg -3'
miRNA:   3'- uCGUCUacac-------GGCGGCGGUCaUCUGg -5'
25289 5' -57 NC_005336.1 + 110908 0.66 0.845484
Target:  5'- cGCGGcgGUGUucgacgugaCGCUGCUggcgaugcacggcguGGUGGACCc -3'
miRNA:   3'- uCGUCuaCACG---------GCGGCGG---------------UCAUCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.