miRNA display CGI


Results 1 - 20 of 434 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25291 3' -62.9 NC_005336.1 + 13221 0.66 0.611433
Target:  5'- gCGCGUCCauagccggcccaucuGCGCGCagaGCucaACCGCaGUGa -3'
miRNA:   3'- -GCGCAGG---------------UGCGCGg--CG---UGGCGaCGCa -5'
25291 3' -62.9 NC_005336.1 + 61632 0.66 0.607518
Target:  5'- uCGCGggcaccaCCACGC-CCGCGCgCGCgccggacGCGUc -3'
miRNA:   3'- -GCGCa------GGUGCGcGGCGUG-GCGa------CGCA- -5'
25291 3' -62.9 NC_005336.1 + 57292 0.66 0.607518
Target:  5'- cCGUGUCCAUGgagauccaGCgCGCAgUGCUGCa- -3'
miRNA:   3'- -GCGCAGGUGCg-------CG-GCGUgGCGACGca -5'
25291 3' -62.9 NC_005336.1 + 101430 0.66 0.607518
Target:  5'- aGCGgcgCCGCGuUGCCgaGCACgcccaCGCUGCGc -3'
miRNA:   3'- gCGCa--GGUGC-GCGG--CGUG-----GCGACGCa -5'
25291 3' -62.9 NC_005336.1 + 75111 0.66 0.607518
Target:  5'- gCGCGUCCGcCGgGCgCGCcACCaGC-GCGg -3'
miRNA:   3'- -GCGCAGGU-GCgCG-GCG-UGG-CGaCGCa -5'
25291 3' -62.9 NC_005336.1 + 84743 0.66 0.607518
Target:  5'- uGCGUCaACGCGU--CACCGCgcGCGUg -3'
miRNA:   3'- gCGCAGgUGCGCGgcGUGGCGa-CGCA- -5'
25291 3' -62.9 NC_005336.1 + 87147 0.66 0.607518
Target:  5'- aGCG-CCGCagcuCGCCGCGCaGCUcGCGg -3'
miRNA:   3'- gCGCaGGUGc---GCGGCGUGgCGA-CGCa -5'
25291 3' -62.9 NC_005336.1 + 36044 0.66 0.607518
Target:  5'- gCGCGUCCugcgUGCGCCcgaagaagaGCACCagcacGCUcGCGUc -3'
miRNA:   3'- -GCGCAGGu---GCGCGG---------CGUGG-----CGA-CGCA- -5'
25291 3' -62.9 NC_005336.1 + 19750 0.66 0.607518
Target:  5'- gGCGaaCGCGCGCUcgGUGCCGCccGCGg -3'
miRNA:   3'- gCGCagGUGCGCGG--CGUGGCGa-CGCa -5'
25291 3' -62.9 NC_005336.1 + 34866 0.66 0.607518
Target:  5'- uCGCGcUCCAucuCGCcgaucuugauGCCGcCGCCGCgGCGg -3'
miRNA:   3'- -GCGC-AGGU---GCG----------CGGC-GUGGCGaCGCa -5'
25291 3' -62.9 NC_005336.1 + 57770 0.66 0.607518
Target:  5'- uCGaggCCGCGCGCgGgCACCuCUGCGa -3'
miRNA:   3'- -GCgcaGGUGCGCGgC-GUGGcGACGCa -5'
25291 3' -62.9 NC_005336.1 + 97942 0.66 0.607518
Target:  5'- uCGCcaGUauagaCGCGCGCCGCGCgCGCgugacgGUGg -3'
miRNA:   3'- -GCG--CAg----GUGCGCGGCGUG-GCGa-----CGCa -5'
25291 3' -62.9 NC_005336.1 + 59660 0.66 0.604583
Target:  5'- cCGCGUgCGCGCGCucaucaacgagacgCGCGCCaCggaggGCGUc -3'
miRNA:   3'- -GCGCAgGUGCGCG--------------GCGUGGcGa----CGCA- -5'
25291 3' -62.9 NC_005336.1 + 68732 0.66 0.597742
Target:  5'- aCGCGgUCGCGCccugGCUGCugCGCgacGCGa -3'
miRNA:   3'- -GCGCaGGUGCG----CGGCGugGCGa--CGCa -5'
25291 3' -62.9 NC_005336.1 + 18997 0.66 0.597742
Target:  5'- gGCGUCCACGaagauggGCCcgaagGCGCCGgUGuCGg -3'
miRNA:   3'- gCGCAGGUGCg------CGG-----CGUGGCgAC-GCa -5'
25291 3' -62.9 NC_005336.1 + 74911 0.66 0.597742
Target:  5'- aGgGUCCACcacguacacgagGCGCC-CGCCGCUcacGCGc -3'
miRNA:   3'- gCgCAGGUG------------CGCGGcGUGGCGA---CGCa -5'
25291 3' -62.9 NC_005336.1 + 42145 0.66 0.597742
Target:  5'- gGCGccgCgGCGCGCgGCcUCGCUGUGc -3'
miRNA:   3'- gCGCa--GgUGCGCGgCGuGGCGACGCa -5'
25291 3' -62.9 NC_005336.1 + 25351 0.66 0.597742
Target:  5'- aCGgaGUCgGUGuCGCCGUACaCGCUGCGg -3'
miRNA:   3'- -GCg-CAGgUGC-GCGGCGUG-GCGACGCa -5'
25291 3' -62.9 NC_005336.1 + 119569 0.66 0.597742
Target:  5'- aCGCGUUCAuguuCGUGCCGCAaaGCaGCc- -3'
miRNA:   3'- -GCGCAGGU----GCGCGGCGUggCGaCGca -5'
25291 3' -62.9 NC_005336.1 + 43375 0.66 0.597742
Target:  5'- gCGCGaCCA-GCGCCGCAaagccaCGC-GCGa -3'
miRNA:   3'- -GCGCaGGUgCGCGGCGUg-----GCGaCGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.