miRNA display CGI


Results 1 - 20 of 434 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25291 3' -62.9 NC_005336.1 + 49265 0.66 0.558933
Target:  5'- uGCGccaUCCuCGCGCuCGCGgCCGCaGUGUa -3'
miRNA:   3'- gCGC---AGGuGCGCG-GCGU-GGCGaCGCA- -5'
25291 3' -62.9 NC_005336.1 + 6421 0.66 0.557971
Target:  5'- cCGCGcucgagcacgaauUCCACGaCGCCGCGagCGCaGCGc -3'
miRNA:   3'- -GCGC-------------AGGUGC-GCGGCGUg-GCGaCGCa -5'
25291 3' -62.9 NC_005336.1 + 109722 0.66 0.557971
Target:  5'- aGCGUgagccgcCCGCGCGgCGCgAUCGCgGUGUa -3'
miRNA:   3'- gCGCA-------GGUGCGCgGCG-UGGCGaCGCA- -5'
25291 3' -62.9 NC_005336.1 + 50712 0.66 0.58799
Target:  5'- gCGCGagUGCGCuucCCGCGCuCGCUGCu- -3'
miRNA:   3'- -GCGCagGUGCGc--GGCGUG-GCGACGca -5'
25291 3' -62.9 NC_005336.1 + 131016 0.66 0.578267
Target:  5'- gCGCGgucguggaCACGcCGgaGCGCUGCUGCGg -3'
miRNA:   3'- -GCGCag------GUGC-GCggCGUGGCGACGCa -5'
25291 3' -62.9 NC_005336.1 + 52630 0.66 0.567613
Target:  5'- uCGCGgacgaggccuaccUCCGCGaGCUGCGCggcgaGCUGCGg -3'
miRNA:   3'- -GCGC-------------AGGUGCgCGGCGUGg----CGACGCa -5'
25291 3' -62.9 NC_005336.1 + 83213 0.66 0.568579
Target:  5'- gCGCGgacgacggGCGCGCgGCGCUGCcGCGg -3'
miRNA:   3'- -GCGCagg-----UGCGCGgCGUGGCGaCGCa -5'
25291 3' -62.9 NC_005336.1 + 13427 0.66 0.58799
Target:  5'- aGC-UCCGCGCGcCCGaagGCCGCcaGCGg -3'
miRNA:   3'- gCGcAGGUGCGC-GGCg--UGGCGa-CGCa -5'
25291 3' -62.9 NC_005336.1 + 27777 0.66 0.58799
Target:  5'- uGC-UCCACGCuGCCcuGCAUCGCgugccgGCGa -3'
miRNA:   3'- gCGcAGGUGCG-CGG--CGUGGCGa-----CGCa -5'
25291 3' -62.9 NC_005336.1 + 77374 0.66 0.578267
Target:  5'- uGCGggCCGaGCGCCGCGCgGgCgGCGg -3'
miRNA:   3'- gCGCa-GGUgCGCGGCGUGgC-GaCGCa -5'
25291 3' -62.9 NC_005336.1 + 124034 0.66 0.578267
Target:  5'- aGCacaCGCGCGCCGUgcgcGCCGCccugGCGa -3'
miRNA:   3'- gCGcagGUGCGCGGCG----UGGCGa---CGCa -5'
25291 3' -62.9 NC_005336.1 + 109870 0.66 0.558933
Target:  5'- ---cUCCACGC-CCGCGCCGaagGCGa -3'
miRNA:   3'- gcgcAGGUGCGcGGCGUGGCga-CGCa -5'
25291 3' -62.9 NC_005336.1 + 131969 0.66 0.58799
Target:  5'- gCGCaUCCGCGCuaccggagGCCGUgcGCCGuCUGCa- -3'
miRNA:   3'- -GCGcAGGUGCG--------CGGCG--UGGC-GACGca -5'
25291 3' -62.9 NC_005336.1 + 13877 0.66 0.58799
Target:  5'- gGCGgcgCCGCGaccaCCGCGCCGUagaGCGUc -3'
miRNA:   3'- gCGCa--GGUGCgc--GGCGUGGCGa--CGCA- -5'
25291 3' -62.9 NC_005336.1 + 124868 0.66 0.58799
Target:  5'- gGCGagCACguGCGCCgGCGCC-CUGCGc -3'
miRNA:   3'- gCGCagGUG--CGCGG-CGUGGcGACGCa -5'
25291 3' -62.9 NC_005336.1 + 104800 0.66 0.568579
Target:  5'- gCGCGUCUucuuCGgGCCGCugUacuacCUGCGUc -3'
miRNA:   3'- -GCGCAGGu---GCgCGGCGugGc----GACGCA- -5'
25291 3' -62.9 NC_005336.1 + 95311 0.66 0.568579
Target:  5'- cCGCGcCCACG-GCCuuGCCGCagucgGCGa -3'
miRNA:   3'- -GCGCaGGUGCgCGGcgUGGCGa----CGCa -5'
25291 3' -62.9 NC_005336.1 + 133735 0.66 0.58799
Target:  5'- gGCuUCCACGCGCUGCucUCGgaGCu- -3'
miRNA:   3'- gCGcAGGUGCGCGGCGu-GGCgaCGca -5'
25291 3' -62.9 NC_005336.1 + 75532 0.66 0.568579
Target:  5'- gGCGUCCACGaGCUugGCGCgCGUgucgcGCGUg -3'
miRNA:   3'- gCGCAGGUGCgCGG--CGUG-GCGa----CGCA- -5'
25291 3' -62.9 NC_005336.1 + 40497 0.66 0.58799
Target:  5'- gCGCGUCCGCGUGCaUGgACaGC-GCGa -3'
miRNA:   3'- -GCGCAGGUGCGCG-GCgUGgCGaCGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.