miRNA display CGI


Results 1 - 20 of 434 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25291 3' -62.9 NC_005336.1 + 461 0.71 0.335889
Target:  5'- cCGCGggcggCCGCGCGuCCGCGacggccCCGCUaaaGCGUu -3'
miRNA:   3'- -GCGCa----GGUGCGC-GGCGU------GGCGA---CGCA- -5'
25291 3' -62.9 NC_005336.1 + 461 0.71 0.335889
Target:  5'- cCGCGggcggCCGCGCGuCCGCGacggccCCGCUaaaGCGUu -3'
miRNA:   3'- -GCGCa----GGUGCGC-GGCGU------GGCGA---CGCA- -5'
25291 3' -62.9 NC_005336.1 + 3163 0.67 0.539785
Target:  5'- aGC-UCCGCGCGgCGCAgCCGCUccaGCu- -3'
miRNA:   3'- gCGcAGGUGCGCgGCGU-GGCGA---CGca -5'
25291 3' -62.9 NC_005336.1 + 3163 0.67 0.539785
Target:  5'- aGC-UCCGCGCGgCGCAgCCGCUccaGCu- -3'
miRNA:   3'- gCGcAGGUGCGCgGCGU-GGCGA---CGca -5'
25291 3' -62.9 NC_005336.1 + 3407 0.78 0.118973
Target:  5'- cCGCGUCCGCGacCGCCGCcauguGCCGC-GCGUc -3'
miRNA:   3'- -GCGCAGGUGC--GCGGCG-----UGGCGaCGCA- -5'
25291 3' -62.9 NC_005336.1 + 3407 0.78 0.118973
Target:  5'- cCGCGUCCGCGacCGCCGCcauguGCCGC-GCGUc -3'
miRNA:   3'- -GCGCAGGUGC--GCGGCG-----UGGCGaCGCA- -5'
25291 3' -62.9 NC_005336.1 + 3792 0.74 0.194164
Target:  5'- cCGCGgCCGCcaGCGCCGCggccaGCCGCUGCc- -3'
miRNA:   3'- -GCGCaGGUG--CGCGGCG-----UGGCGACGca -5'
25291 3' -62.9 NC_005336.1 + 3792 0.74 0.194164
Target:  5'- cCGCGgCCGCcaGCGCCGCggccaGCCGCUGCc- -3'
miRNA:   3'- -GCGCaGGUG--CGCGGCG-----UGGCGACGca -5'
25291 3' -62.9 NC_005336.1 + 3828 0.72 0.269138
Target:  5'- gCGCGcccgCCGCGCGCagcaGCGCCGCcGCc- -3'
miRNA:   3'- -GCGCa---GGUGCGCGg---CGUGGCGaCGca -5'
25291 3' -62.9 NC_005336.1 + 3828 0.72 0.269138
Target:  5'- gCGCGcccgCCGCGCGCagcaGCGCCGCcGCc- -3'
miRNA:   3'- -GCGCa---GGUGCGCGg---CGUGGCGaCGca -5'
25291 3' -62.9 NC_005336.1 + 3888 0.72 0.257143
Target:  5'- cCGCGgCCcCGCGCCGCGCCaGCaGCa- -3'
miRNA:   3'- -GCGCaGGuGCGCGGCGUGG-CGaCGca -5'
25291 3' -62.9 NC_005336.1 + 3888 0.72 0.257143
Target:  5'- cCGCGgCCcCGCGCCGCGCCaGCaGCa- -3'
miRNA:   3'- -GCGCaGGuGCGCGGCGUGG-CGaCGca -5'
25291 3' -62.9 NC_005336.1 + 3914 0.69 0.405649
Target:  5'- aGCGgcagCCGCGCGUccagCGgGCCGCcGCGg -3'
miRNA:   3'- gCGCa---GGUGCGCG----GCgUGGCGaCGCa -5'
25291 3' -62.9 NC_005336.1 + 3950 0.75 0.180682
Target:  5'- aGCG-CCGCGCGCagcaGCGCCGCcaGCGg -3'
miRNA:   3'- gCGCaGGUGCGCGg---CGUGGCGa-CGCa -5'
25291 3' -62.9 NC_005336.1 + 5382 0.73 0.229072
Target:  5'- aGCGUCCACgGCGgCGUGCCGCccuccGCGa -3'
miRNA:   3'- gCGCAGGUG-CGCgGCGUGGCGa----CGCa -5'
25291 3' -62.9 NC_005336.1 + 5469 0.68 0.439445
Target:  5'- gCGCaGUUCGCG-GCCGCgugGCCGCUGUu- -3'
miRNA:   3'- -GCG-CAGGUGCgCGGCG---UGGCGACGca -5'
25291 3' -62.9 NC_005336.1 + 5688 0.67 0.553167
Target:  5'- aGCGUCUcugcgaGCGCCGCggagGCCagcgcgagcgcgucaGCUGCGUc -3'
miRNA:   3'- gCGCAGGug----CGCGGCG----UGG---------------CGACGCA- -5'
25291 3' -62.9 NC_005336.1 + 5779 0.67 0.539785
Target:  5'- gGCGgCCGCGCaCCGCACCcacGCgcacgGCGc -3'
miRNA:   3'- gCGCaGGUGCGcGGCGUGG---CGa----CGCa -5'
25291 3' -62.9 NC_005336.1 + 6002 0.68 0.439445
Target:  5'- uCGCGUCCGUGUGgcagCGCACCGC-GCGc -3'
miRNA:   3'- -GCGCAGGUGCGCg---GCGUGGCGaCGCa -5'
25291 3' -62.9 NC_005336.1 + 6421 0.66 0.557971
Target:  5'- cCGCGcucgagcacgaauUCCACGaCGCCGCGagCGCaGCGc -3'
miRNA:   3'- -GCGC-------------AGGUGC-GCGGCGUg-GCGaCGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.