miRNA display CGI


Results 1 - 20 of 434 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25291 3' -62.9 NC_005336.1 + 130618 0.74 0.194164
Target:  5'- gGUGgagCGCGCGCUGCGCgCGCUGCGc -3'
miRNA:   3'- gCGCag-GUGCGCGGCGUG-GCGACGCa -5'
25291 3' -62.9 NC_005336.1 + 136599 0.75 0.163602
Target:  5'- gGCGgCCGCGCgGCCGCGCUcggagugGCUGCGg -3'
miRNA:   3'- gCGCaGGUGCG-CGGCGUGG-------CGACGCa -5'
25291 3' -62.9 NC_005336.1 + 68630 0.75 0.168037
Target:  5'- aCGCGcCCGCGCugcccGUCGCGgCGCUGCGa -3'
miRNA:   3'- -GCGCaGGUGCG-----CGGCGUgGCGACGCa -5'
25291 3' -62.9 NC_005336.1 + 46268 0.75 0.172161
Target:  5'- gGCGaUCUGCGCGCgGCGCUGCgGCGa -3'
miRNA:   3'- gCGC-AGGUGCGCGgCGUGGCGaCGCa -5'
25291 3' -62.9 NC_005336.1 + 77731 0.75 0.176376
Target:  5'- gGCGauggCCGCGCGCCGCGgcUCGCUGgCGa -3'
miRNA:   3'- gCGCa---GGUGCGCGGCGU--GGCGAC-GCa -5'
25291 3' -62.9 NC_005336.1 + 3950 0.75 0.180682
Target:  5'- aGCG-CCGCGCGCagcaGCGCCGCcaGCGg -3'
miRNA:   3'- gCGCaGGUGCGCGg---CGUGGCGa-CGCa -5'
25291 3' -62.9 NC_005336.1 + 47591 0.75 0.180682
Target:  5'- uCGCGUUCGaggGCGCCGCGCUGCacaccUGCGa -3'
miRNA:   3'- -GCGCAGGUg--CGCGGCGUGGCG-----ACGCa -5'
25291 3' -62.9 NC_005336.1 + 28795 0.75 0.189575
Target:  5'- gCGCGUCCAUGUGCCGCGcgcCCGagaGCGc -3'
miRNA:   3'- -GCGCAGGUGCGCGGCGU---GGCga-CGCa -5'
25291 3' -62.9 NC_005336.1 + 54020 0.75 0.189575
Target:  5'- gCGCGUCCGCGCGCuUGCAagGC-GCGUa -3'
miRNA:   3'- -GCGCAGGUGCGCG-GCGUggCGaCGCA- -5'
25291 3' -62.9 NC_005336.1 + 95638 0.76 0.160053
Target:  5'- gCGCGUCCAUGUGCUuggcgcagaGCGCCGCguagGUGUc -3'
miRNA:   3'- -GCGCAGGUGCGCGG---------CGUGGCGa---CGCA- -5'
25291 3' -62.9 NC_005336.1 + 99921 0.76 0.15619
Target:  5'- gCGCGaCCGCGCGCUGaugcgGCgGCUGCGUg -3'
miRNA:   3'- -GCGCaGGUGCGCGGCg----UGgCGACGCA- -5'
25291 3' -62.9 NC_005336.1 + 14917 0.76 0.152412
Target:  5'- gGCuGcCCGCGCGCCGCGCgGCcGCGa -3'
miRNA:   3'- gCG-CaGGUGCGCGGCGUGgCGaCGCa -5'
25291 3' -62.9 NC_005336.1 + 74848 0.79 0.092469
Target:  5'- gCGCGUUCGCGCGCUGCGCgGC-GCGc -3'
miRNA:   3'- -GCGCAGGUGCGCGGCGUGgCGaCGCa -5'
25291 3' -62.9 NC_005336.1 + 127036 0.79 0.102323
Target:  5'- aCGCGggcCCGCGCGgguaCGCGCCGCUGCa- -3'
miRNA:   3'- -GCGCa--GGUGCGCg---GCGUGGCGACGca -5'
25291 3' -62.9 NC_005336.1 + 128100 0.78 0.107343
Target:  5'- cCGCGaUCCGCGCcugcgaggcggagGUCGCGCUGCUGCGg -3'
miRNA:   3'- -GCGC-AGGUGCG-------------CGGCGUGGCGACGCa -5'
25291 3' -62.9 NC_005336.1 + 43405 0.78 0.117788
Target:  5'- cCGCG-CCGCGCGCCaccgcgaguucauCGCCGCUGCGg -3'
miRNA:   3'- -GCGCaGGUGCGCGGc------------GUGGCGACGCa -5'
25291 3' -62.9 NC_005336.1 + 3407 0.78 0.118973
Target:  5'- cCGCGUCCGCGacCGCCGCcauguGCCGC-GCGUc -3'
miRNA:   3'- -GCGCAGGUGC--GCGGCG-----UGGCGaCGCA- -5'
25291 3' -62.9 NC_005336.1 + 81303 0.77 0.121983
Target:  5'- cCGCGagCGCGCGCgCGCGCCcugGCUGCGa -3'
miRNA:   3'- -GCGCagGUGCGCG-GCGUGG---CGACGCa -5'
25291 3' -62.9 NC_005336.1 + 124697 0.77 0.138117
Target:  5'- gGCGUCgGCggGCGCCG-ACCGCUGCGc -3'
miRNA:   3'- gCGCAGgUG--CGCGGCgUGGCGACGCa -5'
25291 3' -62.9 NC_005336.1 + 75077 0.76 0.141571
Target:  5'- -cCGUCCGCGaGCCGCGCCGCgcgcGCGg -3'
miRNA:   3'- gcGCAGGUGCgCGGCGUGGCGa---CGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.