miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25291 5' -57.2 NC_005336.1 + 129408 0.66 0.843414
Target:  5'- cUGcuGGAcgCCGGCGcGCGCGUGGACc -3'
miRNA:   3'- -ACucUCUcgGGUCGCaCGCGCACUUG- -5'
25291 5' -57.2 NC_005336.1 + 105411 0.66 0.843414
Target:  5'- cGAG-GAGCa-GGaCGUGCGCGgccUGGGCg -3'
miRNA:   3'- aCUCuCUCGggUC-GCACGCGC---ACUUG- -5'
25291 5' -57.2 NC_005336.1 + 61503 0.66 0.843414
Target:  5'- cGAG-GGGCUCAGCGUGaCGCu----- -3'
miRNA:   3'- aCUCuCUCGGGUCGCAC-GCGcacuug -5'
25291 5' -57.2 NC_005336.1 + 5698 0.66 0.843414
Target:  5'- cGAGcgccgcGGAGgCCAGCGcgaGCGCGUcAGCu -3'
miRNA:   3'- aCUC------UCUCgGGUCGCa--CGCGCAcUUG- -5'
25291 5' -57.2 NC_005336.1 + 14363 0.66 0.835183
Target:  5'- cGcGAGcAGCCCcGCG-GCGCGgucgcgGGGCa -3'
miRNA:   3'- aCuCUC-UCGGGuCGCaCGCGCa-----CUUG- -5'
25291 5' -57.2 NC_005336.1 + 110665 0.66 0.835183
Target:  5'- cGGGAGAGCCCu-CGaGCGCGg---- -3'
miRNA:   3'- aCUCUCUCGGGucGCaCGCGCacuug -5'
25291 5' -57.2 NC_005336.1 + 119382 0.66 0.826764
Target:  5'- cGcGAGA-UCC-GCGUGgGCGUGGGCg -3'
miRNA:   3'- aCuCUCUcGGGuCGCACgCGCACUUG- -5'
25291 5' -57.2 NC_005336.1 + 77495 0.66 0.826764
Target:  5'- ---cGGAGCCCGcCGUGCGCGaGAu- -3'
miRNA:   3'- acucUCUCGGGUcGCACGCGCaCUug -5'
25291 5' -57.2 NC_005336.1 + 114998 0.66 0.818166
Target:  5'- cGAgGAGGGCCCcuGGCG-GCGCcggaucgcgaacGUGAAg -3'
miRNA:   3'- aCU-CUCUCGGG--UCGCaCGCG------------CACUUg -5'
25291 5' -57.2 NC_005336.1 + 15807 0.66 0.818166
Target:  5'- cGAGAGcGGCgugcguccguCCGGUGUGCGCGcGGucACg -3'
miRNA:   3'- aCUCUC-UCG----------GGUCGCACGCGCaCU--UG- -5'
25291 5' -57.2 NC_005336.1 + 78964 0.66 0.818166
Target:  5'- --cGAGAGCCCcgacGCGcGCGCGgaguuccaGGACa -3'
miRNA:   3'- acuCUCUCGGGu---CGCaCGCGCa-------CUUG- -5'
25291 5' -57.2 NC_005336.1 + 95805 0.66 0.818166
Target:  5'- -----uGGCCCAGCGcGUccuGCGUGGACa -3'
miRNA:   3'- acucucUCGGGUCGCaCG---CGCACUUG- -5'
25291 5' -57.2 NC_005336.1 + 114768 0.66 0.809397
Target:  5'- gGAGAaGGCuCCGGgaaCGUGgGCGUGGAg -3'
miRNA:   3'- aCUCUcUCG-GGUC---GCACgCGCACUUg -5'
25291 5' -57.2 NC_005336.1 + 136042 0.66 0.809397
Target:  5'- cGGGGuAGCCCAGCccGCGCGccGGCu -3'
miRNA:   3'- aCUCUcUCGGGUCGcaCGCGCacUUG- -5'
25291 5' -57.2 NC_005336.1 + 136042 0.66 0.809397
Target:  5'- cGGGGuAGCCCAGCccGCGCGccGGCu -3'
miRNA:   3'- aCUCUcUCGGGUCGcaCGCGCacUUG- -5'
25291 5' -57.2 NC_005336.1 + 105360 0.66 0.800464
Target:  5'- cGAGGgcGAGCagaCGuGUGUGCGCaUGAGCg -3'
miRNA:   3'- aCUCU--CUCGg--GU-CGCACGCGcACUUG- -5'
25291 5' -57.2 NC_005336.1 + 34681 0.66 0.800464
Target:  5'- ---uGGAGUCCA---UGCGCGUGAGCa -3'
miRNA:   3'- acucUCUCGGGUcgcACGCGCACUUG- -5'
25291 5' -57.2 NC_005336.1 + 38342 0.66 0.800464
Target:  5'- cGcGAGGGCUggaaggcgcgCAGCGUGgGCGUGcucGGCa -3'
miRNA:   3'- aCuCUCUCGG----------GUCGCACgCGCAC---UUG- -5'
25291 5' -57.2 NC_005336.1 + 29207 0.67 0.791377
Target:  5'- uUGGGcgccuccGAGgCCAGCaucGUGCGCGgGAACg -3'
miRNA:   3'- -ACUCu------CUCgGGUCG---CACGCGCaCUUG- -5'
25291 5' -57.2 NC_005336.1 + 109202 0.67 0.791377
Target:  5'- cGGGcc-GCCCGcCGUGCGCGcGAACu -3'
miRNA:   3'- aCUCucuCGGGUcGCACGCGCaCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.