miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25291 5' -57.2 NC_005336.1 + 38342 0.66 0.800464
Target:  5'- cGcGAGGGCUggaaggcgcgCAGCGUGgGCGUGcucGGCa -3'
miRNA:   3'- aCuCUCUCGG----------GUCGCACgCGCAC---UUG- -5'
25291 5' -57.2 NC_005336.1 + 18091 0.68 0.724205
Target:  5'- cGAGGuccAGCaCCGGCGUccacccGgGCGUGAACa -3'
miRNA:   3'- aCUCUc--UCG-GGUCGCA------CgCGCACUUG- -5'
25291 5' -57.2 NC_005336.1 + 53561 0.68 0.738057
Target:  5'- gGAGGaGGCCgCGGUGgucgcggccaugcaGCGCGUGGGCg -3'
miRNA:   3'- aCUCUcUCGG-GUCGCa-------------CGCGCACUUG- -5'
25291 5' -57.2 NC_005336.1 + 35335 0.67 0.753663
Target:  5'- cGAGcGGAuGCCCAGCGaggGCGCGccgcGGCg -3'
miRNA:   3'- aCUC-UCU-CGGGUCGCa--CGCGCac--UUG- -5'
25291 5' -57.2 NC_005336.1 + 74578 0.67 0.763278
Target:  5'- gGAGAGucGCCgCuGGCGUGCGUGcUGcGCg -3'
miRNA:   3'- aCUCUCu-CGG-G-UCGCACGCGC-ACuUG- -5'
25291 5' -57.2 NC_005336.1 + 97070 0.67 0.782144
Target:  5'- ------uGCgCGGCGUGCGgGUGGACg -3'
miRNA:   3'- acucucuCGgGUCGCACGCgCACUUG- -5'
25291 5' -57.2 NC_005336.1 + 42483 0.67 0.782144
Target:  5'- -cGGAGGuGCCCucgccgAGCGUGCGCccGGGCu -3'
miRNA:   3'- acUCUCU-CGGG------UCGCACGCGcaCUUG- -5'
25291 5' -57.2 NC_005336.1 + 29207 0.67 0.791377
Target:  5'- uUGGGcgccuccGAGgCCAGCaucGUGCGCGgGAACg -3'
miRNA:   3'- -ACUCu------CUCgGGUCG---CACGCGCaCUUG- -5'
25291 5' -57.2 NC_005336.1 + 109202 0.67 0.791377
Target:  5'- cGGGcc-GCCCGcCGUGCGCGcGAACu -3'
miRNA:   3'- aCUCucuCGGGUcGCACGCGCaCUUG- -5'
25291 5' -57.2 NC_005336.1 + 59653 0.69 0.681804
Target:  5'- aGAGAGAGCCgcuucucUAGCGUGaacaccuCG-GUGAGCa -3'
miRNA:   3'- aCUCUCUCGG-------GUCGCAC-------GCgCACUUG- -5'
25291 5' -57.2 NC_005336.1 + 3719 0.69 0.663368
Target:  5'- gGAGAGGcGCCCGgggcGCGgcggGCGCgGUGAGg -3'
miRNA:   3'- aCUCUCU-CGGGU----CGCa---CGCG-CACUUg -5'
25291 5' -57.2 NC_005336.1 + 126934 0.69 0.662341
Target:  5'- aGAGAGGGCCCGaCGgUGCGCuGUuccgguaccuggaGAGCg -3'
miRNA:   3'- aCUCUCUCGGGUcGC-ACGCG-CA-------------CUUG- -5'
25291 5' -57.2 NC_005336.1 + 72298 0.75 0.350709
Target:  5'- cUGAacGAGCaCGGCGUGCGCGUGAuccGCg -3'
miRNA:   3'- -ACUcuCUCGgGUCGCACGCGCACU---UG- -5'
25291 5' -57.2 NC_005336.1 + 33152 0.73 0.435346
Target:  5'- gGGGAGAGCCCGGaGccgagcuccaUGCGCGUGcucuGCa -3'
miRNA:   3'- aCUCUCUCGGGUCgC----------ACGCGCACu---UG- -5'
25291 5' -57.2 NC_005336.1 + 65781 0.71 0.530635
Target:  5'- gGAcGGcGUCUccgcgAGCGUGCGCGUGGACg -3'
miRNA:   3'- aCUcUCuCGGG-----UCGCACGCGCACUUG- -5'
25291 5' -57.2 NC_005336.1 + 57335 0.71 0.560758
Target:  5'- cGGGAcGGCCCucCGUGCaccGCGUGGACa -3'
miRNA:   3'- aCUCUcUCGGGucGCACG---CGCACUUG- -5'
25291 5' -57.2 NC_005336.1 + 99402 0.7 0.591332
Target:  5'- cGGGAGAGUCCuuCGcGCGCGaGGACu -3'
miRNA:   3'- aCUCUCUCGGGucGCaCGCGCaCUUG- -5'
25291 5' -57.2 NC_005336.1 + 123322 0.7 0.601593
Target:  5'- cGGGcucaucGAGCgCGGCGcGUGCGUGGGCg -3'
miRNA:   3'- aCUCu-----CUCGgGUCGCaCGCGCACUUG- -5'
25291 5' -57.2 NC_005336.1 + 43666 0.69 0.642789
Target:  5'- gGAGAuGGUCauGUGUGUGCGUGGACg -3'
miRNA:   3'- aCUCUcUCGGguCGCACGCGCACUUG- -5'
25291 5' -57.2 NC_005336.1 + 126781 0.69 0.642789
Target:  5'- ------uGCUCGGCGUGCGCGUGuuGCg -3'
miRNA:   3'- acucucuCGGGUCGCACGCGCACu-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.