miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25292 3' -56.5 NC_005336.1 + 127161 0.66 0.883877
Target:  5'- aCGCCGCUGCaCUCcuacauGUGCUUCg- -3'
miRNA:   3'- -GCGGCGACG-GAGcucuu-CAUGAGGag -5'
25292 3' -56.5 NC_005336.1 + 29264 0.66 0.883877
Target:  5'- gCGCCacGCUGCUgCGGGAGGcguCcCCUCg -3'
miRNA:   3'- -GCGG--CGACGGaGCUCUUCau-GaGGAG- -5'
25292 3' -56.5 NC_005336.1 + 126280 0.66 0.883877
Target:  5'- uGCCGCUgGCCgCGAugacgccgccGGAGUcGCUCCg- -3'
miRNA:   3'- gCGGCGA-CGGaGCU----------CUUCA-UGAGGag -5'
25292 3' -56.5 NC_005336.1 + 118741 0.66 0.883877
Target:  5'- uGCCGCagcaUGCCaagCGuGAGGcUACUCC-Cg -3'
miRNA:   3'- gCGGCG----ACGGa--GCuCUUC-AUGAGGaG- -5'
25292 3' -56.5 NC_005336.1 + 103643 0.66 0.876769
Target:  5'- aCGCCGUgGUCgaggUGcAGGAGUuCUCCUCc -3'
miRNA:   3'- -GCGGCGaCGGa---GC-UCUUCAuGAGGAG- -5'
25292 3' -56.5 NC_005336.1 + 75794 0.66 0.876769
Target:  5'- aGCCGCauggccGCCUcCGAGAAG-ACgcggUCCUUg -3'
miRNA:   3'- gCGGCGa-----CGGA-GCUCUUCaUG----AGGAG- -5'
25292 3' -56.5 NC_005336.1 + 38925 0.66 0.86944
Target:  5'- cCGCgCGC-GCCUgGAGGAGU--UCCUg -3'
miRNA:   3'- -GCG-GCGaCGGAgCUCUUCAugAGGAg -5'
25292 3' -56.5 NC_005336.1 + 59242 0.66 0.86944
Target:  5'- uCGcCCGCgcGCUUCGcGgcGUGCUCgCUCg -3'
miRNA:   3'- -GC-GGCGa-CGGAGCuCuuCAUGAG-GAG- -5'
25292 3' -56.5 NC_005336.1 + 127390 0.66 0.86944
Target:  5'- gGCCGCgcGCCgacaaGAGGAGauggacgagcUGCUUCUCg -3'
miRNA:   3'- gCGGCGa-CGGag---CUCUUC----------AUGAGGAG- -5'
25292 3' -56.5 NC_005336.1 + 38192 0.66 0.86944
Target:  5'- gGCCGCgcggucacGCC-CGAGgcGUACgCCUUc -3'
miRNA:   3'- gCGGCGa-------CGGaGCUCuuCAUGaGGAG- -5'
25292 3' -56.5 NC_005336.1 + 76328 0.66 0.86944
Target:  5'- uGCCGa-GCgUCGAGAA--GCUCCUg -3'
miRNA:   3'- gCGGCgaCGgAGCUCUUcaUGAGGAg -5'
25292 3' -56.5 NC_005336.1 + 97667 0.66 0.86944
Target:  5'- gCGCCGCggcGCCUCGGGGuc-GC-CCgUCa -3'
miRNA:   3'- -GCGGCGa--CGGAGCUCUucaUGaGG-AG- -5'
25292 3' -56.5 NC_005336.1 + 87306 0.66 0.861896
Target:  5'- aCGCUGaugGCCaCGAucaagaacguGAAGUACUUCUCg -3'
miRNA:   3'- -GCGGCga-CGGaGCU----------CUUCAUGAGGAG- -5'
25292 3' -56.5 NC_005336.1 + 34841 0.66 0.861896
Target:  5'- gGCCGC-GCCgugCGAGAucaugcAGUcgcGCUCCa- -3'
miRNA:   3'- gCGGCGaCGGa--GCUCU------UCA---UGAGGag -5'
25292 3' -56.5 NC_005336.1 + 122595 0.66 0.861896
Target:  5'- uGCCGCcGCC-CGAGGAGgcCgcgCCg- -3'
miRNA:   3'- gCGGCGaCGGaGCUCUUCauGa--GGag -5'
25292 3' -56.5 NC_005336.1 + 81196 0.66 0.861896
Target:  5'- gCGCCG-UGCUgCGGGggG-ACUCCg- -3'
miRNA:   3'- -GCGGCgACGGaGCUCuuCaUGAGGag -5'
25292 3' -56.5 NC_005336.1 + 53421 0.66 0.860362
Target:  5'- uCGCCGCUGCCggacgacuacggCGAGcccaucGUGCUCa-- -3'
miRNA:   3'- -GCGGCGACGGa-----------GCUCuu----CAUGAGgag -5'
25292 3' -56.5 NC_005336.1 + 64204 0.66 0.859591
Target:  5'- uGCUGCUGCUcuacuuccgcgccuUCGGcgucuccagcguGGAGUuCUCCUCg -3'
miRNA:   3'- gCGGCGACGG--------------AGCU------------CUUCAuGAGGAG- -5'
25292 3' -56.5 NC_005336.1 + 75740 0.66 0.854142
Target:  5'- cCGCCcuCUGCCUCaGcGAGGUGCUUgUUg -3'
miRNA:   3'- -GCGGc-GACGGAG-CuCUUCAUGAGgAG- -5'
25292 3' -56.5 NC_005336.1 + 13602 0.66 0.854142
Target:  5'- gGCCGCUcuCCUCGccGucGUGCUCCa- -3'
miRNA:   3'- gCGGCGAc-GGAGCu-CuuCAUGAGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.