miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25292 5' -59.2 NC_005336.1 + 82491 0.66 0.786829
Target:  5'- gGGCcgGGUCUCgaUCUCGGgcacgAGCuCGCCc -3'
miRNA:   3'- gCCG--CUAGAGgaAGAGCC-----UCG-GCGGa -5'
25292 5' -59.2 NC_005336.1 + 136597 0.66 0.777768
Target:  5'- aCGGCGGccgCgcggCCgcgCUCGGAGUgGCUg -3'
miRNA:   3'- -GCCGCUa--Ga---GGaa-GAGCCUCGgCGGa -5'
25292 5' -59.2 NC_005336.1 + 136597 0.66 0.777768
Target:  5'- aCGGCGGccgCgcggCCgcgCUCGGAGUgGCUg -3'
miRNA:   3'- -GCCGCUa--Ga---GGaa-GAGCCUCGgCGGa -5'
25292 5' -59.2 NC_005336.1 + 121776 0.66 0.777768
Target:  5'- gCGGC--UCUCCUUCucgcccUCGGAGCUGgUg -3'
miRNA:   3'- -GCCGcuAGAGGAAG------AGCCUCGGCgGa -5'
25292 5' -59.2 NC_005336.1 + 76821 0.66 0.76858
Target:  5'- uCGGCG--CUCCUUUUaCGGGGuCUGUCUa -3'
miRNA:   3'- -GCCGCuaGAGGAAGA-GCCUC-GGCGGA- -5'
25292 5' -59.2 NC_005336.1 + 72106 0.66 0.76858
Target:  5'- cCGcGCaGUCUUCgaggCUCuGGAGCCGCUg -3'
miRNA:   3'- -GC-CGcUAGAGGaa--GAG-CCUCGGCGGa -5'
25292 5' -59.2 NC_005336.1 + 38134 0.66 0.759276
Target:  5'- gGGCGAgcggaacugCUCUUggcUCUCGGAcguaGCCGCg- -3'
miRNA:   3'- gCCGCUa--------GAGGA---AGAGCCU----CGGCGga -5'
25292 5' -59.2 NC_005336.1 + 44921 0.66 0.759276
Target:  5'- aCGGCGcgCgcguggUCCUgcUCUCaGAGCUGCUg -3'
miRNA:   3'- -GCCGCuaG------AGGA--AGAGcCUCGGCGGa -5'
25292 5' -59.2 NC_005336.1 + 30412 0.66 0.75834
Target:  5'- uCGGCgcaGAagUUCUUCUUGGcuagggcGGCCGCCg -3'
miRNA:   3'- -GCCG---CUagAGGAAGAGCC-------UCGGCGGa -5'
25292 5' -59.2 NC_005336.1 + 58430 0.66 0.749864
Target:  5'- aCGaGCGugggCUUCUUCUCGGccucgaGGCgCGCCa -3'
miRNA:   3'- -GC-CGCua--GAGGAAGAGCC------UCG-GCGGa -5'
25292 5' -59.2 NC_005336.1 + 64468 0.66 0.740352
Target:  5'- aCGGCGcgUUCCUggaCaGAGUCGCCg -3'
miRNA:   3'- -GCCGCuaGAGGAagaGcCUCGGCGGa -5'
25292 5' -59.2 NC_005336.1 + 111463 0.67 0.730748
Target:  5'- aGGCGAUUaacgUUUUUCUC-GAGaCCGCCUc -3'
miRNA:   3'- gCCGCUAG----AGGAAGAGcCUC-GGCGGA- -5'
25292 5' -59.2 NC_005336.1 + 19316 0.67 0.730748
Target:  5'- aGcGCGGaggCCaUCUCGGGGCgCGCCUc -3'
miRNA:   3'- gC-CGCUagaGGaAGAGCCUCG-GCGGA- -5'
25292 5' -59.2 NC_005336.1 + 77464 0.67 0.721063
Target:  5'- -aGCGAUCUgcgcaccgCCUUCgacgacgccgCGGAGCcCGCCg -3'
miRNA:   3'- gcCGCUAGA--------GGAAGa---------GCCUCG-GCGGa -5'
25292 5' -59.2 NC_005336.1 + 121461 0.67 0.721063
Target:  5'- aGGaGAUCUUCUcUUCGGAGCacagcgcgCGCCUg -3'
miRNA:   3'- gCCgCUAGAGGAaGAGCCUCG--------GCGGA- -5'
25292 5' -59.2 NC_005336.1 + 97998 0.67 0.711305
Target:  5'- --aCGGUCUUCUUCUCGG-GCacggGCCUg -3'
miRNA:   3'- gccGCUAGAGGAAGAGCCuCGg---CGGA- -5'
25292 5' -59.2 NC_005336.1 + 65645 0.67 0.711305
Target:  5'- gGGCG-UCUCCUUCUCcGcAGCCuucccGCCc -3'
miRNA:   3'- gCCGCuAGAGGAAGAGcC-UCGG-----CGGa -5'
25292 5' -59.2 NC_005336.1 + 122671 0.67 0.691601
Target:  5'- gCGGuCGAUCUgCCUUCgcgagcgCGGcugGGCCGuCCUc -3'
miRNA:   3'- -GCC-GCUAGA-GGAAGa------GCC---UCGGC-GGA- -5'
25292 5' -59.2 NC_005336.1 + 9689 0.67 0.691601
Target:  5'- gCGGCGGcCUCCUcggCGGcGGCCGCgCUc -3'
miRNA:   3'- -GCCGCUaGAGGAagaGCC-UCGGCG-GA- -5'
25292 5' -59.2 NC_005336.1 + 101071 0.67 0.691601
Target:  5'- aCGGCGggCggcagaccuaCUUCUCGGGGCgGCgCUc -3'
miRNA:   3'- -GCCGCuaGag--------GAAGAGCCUCGgCG-GA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.