Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25292 | 5' | -59.2 | NC_005336.1 | + | 17445 | 1.08 | 0.001677 |
Target: 5'- gCGGCGAUCUCCUUCUCGGAGCCGCCUa -3' miRNA: 3'- -GCCGCUAGAGGAAGAGCCUCGGCGGA- -5' |
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25292 | 5' | -59.2 | NC_005336.1 | + | 81671 | 0.78 | 0.189928 |
Target: 5'- gCGGCcuccucGAUCUCCUccaUCUUGcGAGCCGCCa -3' miRNA: 3'- -GCCG------CUAGAGGA---AGAGC-CUCGGCGGa -5' |
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25292 | 5' | -59.2 | NC_005336.1 | + | 90247 | 0.77 | 0.214506 |
Target: 5'- gCGGCG--CUCagUCUCGGGGCCGCCg -3' miRNA: 3'- -GCCGCuaGAGgaAGAGCCUCGGCGGa -5' |
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25292 | 5' | -59.2 | NC_005336.1 | + | 114364 | 0.75 | 0.278209 |
Target: 5'- gCGGCGAUauacCUCCUUauugaaCUCGGcuuAGCCGCCg -3' miRNA: 3'- -GCCGCUA----GAGGAA------GAGCC---UCGGCGGa -5' |
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25292 | 5' | -59.2 | NC_005336.1 | + | 89995 | 0.74 | 0.311821 |
Target: 5'- aCGGCGucgagCUgCUUCUCGGAGCgCGCgCUc -3' miRNA: 3'- -GCCGCua---GAgGAAGAGCCUCG-GCG-GA- -5' |
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25292 | 5' | -59.2 | NC_005336.1 | + | 16013 | 0.71 | 0.448127 |
Target: 5'- gGGCGuGUUUCCgaggUCgUCGGcGGCCGCCg -3' miRNA: 3'- gCCGC-UAGAGGa---AG-AGCC-UCGGCGGa -5' |
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25292 | 5' | -59.2 | NC_005336.1 | + | 128440 | 0.71 | 0.47543 |
Target: 5'- gCGGCGua-UUCUUCUCGGAcUCGCCg -3' miRNA: 3'- -GCCGCuagAGGAAGAGCCUcGGCGGa -5' |
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25292 | 5' | -59.2 | NC_005336.1 | + | 9247 | 0.71 | 0.484714 |
Target: 5'- gCGGCGcgcgguagacuGUCgUCCggcUCUCGGccAGCCGCCg -3' miRNA: 3'- -GCCGC-----------UAG-AGGa--AGAGCC--UCGGCGGa -5' |
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25292 | 5' | -59.2 | NC_005336.1 | + | 88559 | 0.71 | 0.494085 |
Target: 5'- -cGCGAgCUCCUUgUCGGAGCCcaGCUUc -3' miRNA: 3'- gcCGCUaGAGGAAgAGCCUCGG--CGGA- -5' |
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25292 | 5' | -59.2 | NC_005336.1 | + | 45203 | 0.7 | 0.542076 |
Target: 5'- aGGUGcuggaCUCCgccgCGGAGCCGCCg -3' miRNA: 3'- gCCGCua---GAGGaagaGCCUCGGCGGa -5' |
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25292 | 5' | -59.2 | NC_005336.1 | + | 111392 | 0.7 | 0.551869 |
Target: 5'- -uGCGGUCUugCCggagC-CGGAGCCGCCg -3' miRNA: 3'- gcCGCUAGA--GGaa--GaGCCUCGGCGGa -5' |
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25292 | 5' | -59.2 | NC_005336.1 | + | 23163 | 0.69 | 0.591514 |
Target: 5'- -cGCGG-CUCCUUCUCGG-GCCGgUa -3' miRNA: 3'- gcCGCUaGAGGAAGAGCCuCGGCgGa -5' |
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25292 | 5' | -59.2 | NC_005336.1 | + | 65234 | 0.69 | 0.611532 |
Target: 5'- gCGGCGAcUCUCCggacagCGGcgcGCCGCCc -3' miRNA: 3'- -GCCGCU-AGAGGaaga--GCCu--CGGCGGa -5' |
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25292 | 5' | -59.2 | NC_005336.1 | + | 136277 | 0.68 | 0.621567 |
Target: 5'- uCGGCGcgCUCUUcCgccccgCGGcGCCGCCg -3' miRNA: 3'- -GCCGCuaGAGGAaGa-----GCCuCGGCGGa -5' |
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25292 | 5' | -59.2 | NC_005336.1 | + | 136277 | 0.68 | 0.621567 |
Target: 5'- uCGGCGcgCUCUUcCgccccgCGGcGCCGCCg -3' miRNA: 3'- -GCCGCuaGAGGAaGa-----GCCuCGGCGGa -5' |
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25292 | 5' | -59.2 | NC_005336.1 | + | 115959 | 0.68 | 0.631609 |
Target: 5'- aGGCGAUUcucgCUUUCgucgCGGAcGUCGCCUu -3' miRNA: 3'- gCCGCUAGa---GGAAGa---GCCU-CGGCGGA- -5' |
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25292 | 5' | -59.2 | NC_005336.1 | + | 17135 | 0.68 | 0.631609 |
Target: 5'- uCGGCGcaggugCUCCUUCac-GAGCCGCUUg -3' miRNA: 3'- -GCCGCua----GAGGAAGagcCUCGGCGGA- -5' |
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25292 | 5' | -59.2 | NC_005336.1 | + | 104795 | 0.68 | 0.641652 |
Target: 5'- gCGGCGcgCgUCUUCUUcGGGCCGCUg -3' miRNA: 3'- -GCCGCuaGaGGAAGAGcCUCGGCGGa -5' |
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25292 | 5' | -59.2 | NC_005336.1 | + | 74503 | 0.68 | 0.641652 |
Target: 5'- gCGGaCGcUCUCgCgcgcCUCGGAGCCGCg- -3' miRNA: 3'- -GCC-GCuAGAG-Gaa--GAGCCUCGGCGga -5' |
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25292 | 5' | -59.2 | NC_005336.1 | + | 33957 | 0.68 | 0.641652 |
Target: 5'- gCGGCGcgcgaccgacuUCUUCUUCUgcaGGuGCCGCCg -3' miRNA: 3'- -GCCGCu----------AGAGGAAGAg--CCuCGGCGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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