miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25292 5' -59.2 NC_005336.1 + 30412 0.66 0.75834
Target:  5'- uCGGCgcaGAagUUCUUCUUGGcuagggcGGCCGCCg -3'
miRNA:   3'- -GCCG---CUagAGGAAGAGCC-------UCGGCGGa -5'
25292 5' -59.2 NC_005336.1 + 19748 0.68 0.661709
Target:  5'- gCGGCGAaCgcgcgCUCGGuGCCGCCc -3'
miRNA:   3'- -GCCGCUaGaggaaGAGCCuCGGCGGa -5'
25292 5' -59.2 NC_005336.1 + 9689 0.67 0.691601
Target:  5'- gCGGCGGcCUCCUcggCGGcGGCCGCgCUc -3'
miRNA:   3'- -GCCGCUaGAGGAagaGCC-UCGGCG-GA- -5'
25292 5' -59.2 NC_005336.1 + 122671 0.67 0.691601
Target:  5'- gCGGuCGAUCUgCCUUCgcgagcgCGGcugGGCCGuCCUc -3'
miRNA:   3'- -GCC-GCUAGA-GGAAGa------GCC---UCGGC-GGA- -5'
25292 5' -59.2 NC_005336.1 + 101071 0.67 0.691601
Target:  5'- aCGGCGggCggcagaccuaCUUCUCGGGGCgGCgCUc -3'
miRNA:   3'- -GCCGCuaGag--------GAAGAGCCUCGgCG-GA- -5'
25292 5' -59.2 NC_005336.1 + 97998 0.67 0.711305
Target:  5'- --aCGGUCUUCUUCUCGG-GCacggGCCUg -3'
miRNA:   3'- gccGCUAGAGGAAGAGCCuCGg---CGGA- -5'
25292 5' -59.2 NC_005336.1 + 19316 0.67 0.730748
Target:  5'- aGcGCGGaggCCaUCUCGGGGCgCGCCUc -3'
miRNA:   3'- gC-CGCUagaGGaAGAGCCUCG-GCGGA- -5'
25292 5' -59.2 NC_005336.1 + 64468 0.66 0.740352
Target:  5'- aCGGCGcgUUCCUggaCaGAGUCGCCg -3'
miRNA:   3'- -GCCGCuaGAGGAagaGcCUCGGCGGa -5'
25292 5' -59.2 NC_005336.1 + 58430 0.66 0.749864
Target:  5'- aCGaGCGugggCUUCUUCUCGGccucgaGGCgCGCCa -3'
miRNA:   3'- -GC-CGCua--GAGGAAGAGCC------UCG-GCGGa -5'
25292 5' -59.2 NC_005336.1 + 104795 0.68 0.641652
Target:  5'- gCGGCGcgCgUCUUCUUcGGGCCGCUg -3'
miRNA:   3'- -GCCGCuaGaGGAAGAGcCUCGGCGGa -5'
25292 5' -59.2 NC_005336.1 + 85767 0.68 0.641652
Target:  5'- aCGuGCGAuaucaUCUCCaugaucUUCUUGGAGUCGUCg -3'
miRNA:   3'- -GC-CGCU-----AGAGG------AAGAGCCUCGGCGGa -5'
25292 5' -59.2 NC_005336.1 + 74503 0.68 0.641652
Target:  5'- gCGGaCGcUCUCgCgcgcCUCGGAGCCGCg- -3'
miRNA:   3'- -GCC-GCuAGAG-Gaa--GAGCCUCGGCGga -5'
25292 5' -59.2 NC_005336.1 + 114364 0.75 0.278209
Target:  5'- gCGGCGAUauacCUCCUUauugaaCUCGGcuuAGCCGCCg -3'
miRNA:   3'- -GCCGCUA----GAGGAA------GAGCC---UCGGCGGa -5'
25292 5' -59.2 NC_005336.1 + 89995 0.74 0.311821
Target:  5'- aCGGCGucgagCUgCUUCUCGGAGCgCGCgCUc -3'
miRNA:   3'- -GCCGCua---GAgGAAGAGCCUCG-GCG-GA- -5'
25292 5' -59.2 NC_005336.1 + 45203 0.7 0.542076
Target:  5'- aGGUGcuggaCUCCgccgCGGAGCCGCCg -3'
miRNA:   3'- gCCGCua---GAGGaagaGCCUCGGCGGa -5'
25292 5' -59.2 NC_005336.1 + 111392 0.7 0.551869
Target:  5'- -uGCGGUCUugCCggagC-CGGAGCCGCCg -3'
miRNA:   3'- gcCGCUAGA--GGaa--GaGCCUCGGCGGa -5'
25292 5' -59.2 NC_005336.1 + 23163 0.69 0.591514
Target:  5'- -cGCGG-CUCCUUCUCGG-GCCGgUa -3'
miRNA:   3'- gcCGCUaGAGGAAGAGCCuCGGCgGa -5'
25292 5' -59.2 NC_005336.1 + 136277 0.68 0.621567
Target:  5'- uCGGCGcgCUCUUcCgccccgCGGcGCCGCCg -3'
miRNA:   3'- -GCCGCuaGAGGAaGa-----GCCuCGGCGGa -5'
25292 5' -59.2 NC_005336.1 + 17135 0.68 0.631609
Target:  5'- uCGGCGcaggugCUCCUUCac-GAGCCGCUUg -3'
miRNA:   3'- -GCCGCua----GAGGAAGagcCUCGGCGGA- -5'
25292 5' -59.2 NC_005336.1 + 33957 0.68 0.641652
Target:  5'- gCGGCGcgcgaccgacuUCUUCUUCUgcaGGuGCCGCCg -3'
miRNA:   3'- -GCCGCu----------AGAGGAAGAg--CCuCGGCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.