miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
253 3' -49.1 AC_000008.1 + 29846 0.66 0.921098
Target:  5'- cGAUGcGGaAGAgaguGAGGACGaACGCGCc -3'
miRNA:   3'- -CUAC-UCaUCUac--CUUCUGCaUGCGCG- -5'
253 3' -49.1 AC_000008.1 + 24307 0.66 0.9145
Target:  5'- -----cUAGAugUGGGAGACG-ACGUGCu -3'
miRNA:   3'- cuacucAUCU--ACCUUCUGCaUGCGCG- -5'
253 3' -49.1 AC_000008.1 + 16032 0.67 0.892044
Target:  5'- cGAUGAcgccaucgacgcgGUGG-UGGAGGAg--GCGCGCa -3'
miRNA:   3'- -CUACU-------------CAUCuACCUUCUgcaUGCGCG- -5'
253 3' -49.1 AC_000008.1 + 6238 0.67 0.868394
Target:  5'- uGAUGGGacuaUAGAUGGguGGuCGgGCGCGUu -3'
miRNA:   3'- -CUACUC----AUCUACCuuCU-GCaUGCGCG- -5'
253 3' -49.1 AC_000008.1 + 12433 0.67 0.859677
Target:  5'- cGUGGGagaagGGcAUGGAGGcuGCGcGCGCGCu -3'
miRNA:   3'- cUACUCa----UC-UACCUUC--UGCaUGCGCG- -5'
253 3' -49.1 AC_000008.1 + 6697 0.68 0.850685
Target:  5'- --gGGGUGGGUGagcgcGGAGGCGUACaugcCGCa -3'
miRNA:   3'- cuaCUCAUCUAC-----CUUCUGCAUGc---GCG- -5'
253 3' -49.1 AC_000008.1 + 20218 0.68 0.841429
Target:  5'- cGGUG-GUGauGGUGGggGcugGCGgGCGCGCc -3'
miRNA:   3'- -CUACuCAU--CUACCuuC---UGCaUGCGCG- -5'
253 3' -49.1 AC_000008.1 + 17070 0.68 0.812184
Target:  5'- --gGGGUAGccaucuUGGAAaGCGgGCGCGCg -3'
miRNA:   3'- cuaCUCAUCu-----ACCUUcUGCaUGCGCG- -5'
253 3' -49.1 AC_000008.1 + 12651 0.7 0.725598
Target:  5'- --cGGcu-GGUGGggGAUGUGCGCGa -3'
miRNA:   3'- cuaCUcauCUACCuuCUGCAUGCGCg -5'
253 3' -49.1 AC_000008.1 + 23933 0.71 0.690966
Target:  5'- -----aUGGuUGGggGACGUcGCGCGCa -3'
miRNA:   3'- cuacucAUCuACCuuCUGCA-UGCGCG- -5'
253 3' -49.1 AC_000008.1 + 45 0.72 0.584949
Target:  5'- aAUGAGgGGGUGGAGuuuguGACGUG-GCGCg -3'
miRNA:   3'- cUACUCaUCUACCUU-----CUGCAUgCGCG- -5'
253 3' -49.1 AC_000008.1 + 45 0.72 0.584949
Target:  5'- aAUGAGgGGGUGGAGuuuguGACGUG-GCGCg -3'
miRNA:   3'- cUACUCaUCUACCUU-----CUGCAUgCGCG- -5'
253 3' -49.1 AC_000008.1 + 13860 1.14 0.001249
Target:  5'- aGAUGAGUAGAUGGAAGACGUACGCGCa -3'
miRNA:   3'- -CUACUCAUCUACCUUCUGCAUGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.