miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
253 5' -66.1 AC_000008.1 + 8278 0.66 0.183315
Target:  5'- aGGACG-GCC-GGCgCCGCcgaucugaaauGuCCCGUCCGg -3'
miRNA:   3'- -CCUGCaCGGuCCG-GGCG-----------C-GGGCGGGU- -5'
253 5' -66.1 AC_000008.1 + 19913 0.66 0.183315
Target:  5'- aGGGCGcGCggUAGuGCCCGCGCaCGCgCAc -3'
miRNA:   3'- -CCUGCaCG--GUC-CGGGCGCGgGCGgGU- -5'
253 5' -66.1 AC_000008.1 + 18565 0.66 0.17862
Target:  5'- -uGC-UGCCAGGCCCGa--CCGCCg- -3'
miRNA:   3'- ccUGcACGGUCCGGGCgcgGGCGGgu -5'
253 5' -66.1 AC_000008.1 + 23678 0.66 0.174033
Target:  5'- cGACGuUGCCAGcGCgCGCgggugccaccGCCaGCCCAg -3'
miRNA:   3'- cCUGC-ACGGUC-CGgGCG----------CGGgCGGGU- -5'
253 5' -66.1 AC_000008.1 + 5476 0.67 0.15672
Target:  5'- cGGCGUgGCCcuuGGCgCGCaGCuuGCCCu -3'
miRNA:   3'- cCUGCA-CGGu--CCGgGCG-CGggCGGGu -5'
253 5' -66.1 AC_000008.1 + 19608 0.67 0.152642
Target:  5'- -cGCG-GCCAgccuucgagcGGCCCGCauGgCCGCCCGu -3'
miRNA:   3'- ccUGCaCGGU----------CCGGGCG--CgGGCGGGU- -5'
253 5' -66.1 AC_000008.1 + 17526 0.67 0.140979
Target:  5'- cGcCGUcGCCA-GCCCGUGCUgGCCCc -3'
miRNA:   3'- cCuGCA-CGGUcCGGGCGCGGgCGGGu -5'
253 5' -66.1 AC_000008.1 + 23737 0.68 0.123344
Target:  5'- aGGGCGcgucgGCUugGGGCCCagcgcaggucaGCGCCCGCgUCAa -3'
miRNA:   3'- -CCUGCa----CGG--UCCGGG-----------CGCGGGCG-GGU- -5'
253 5' -66.1 AC_000008.1 + 24691 0.68 0.120072
Target:  5'- ---aGUGCCGGGCCCG-GCgCCGCg-- -3'
miRNA:   3'- ccugCACGGUCCGGGCgCG-GGCGggu -5'
253 5' -66.1 AC_000008.1 + 10619 0.68 0.11688
Target:  5'- cGGACGUaGUCGcGGCgCGC-CUCGCCCu -3'
miRNA:   3'- -CCUGCA-CGGU-CCGgGCGcGGGCGGGu -5'
253 5' -66.1 AC_000008.1 + 23541 0.68 0.11688
Target:  5'- cGGACG-GCU-GGCuCUGCaGCgCCGCCCGc -3'
miRNA:   3'- -CCUGCaCGGuCCG-GGCG-CG-GGCGGGU- -5'
253 5' -66.1 AC_000008.1 + 24643 0.69 0.102079
Target:  5'- aGGGCGcuccuagccgcGCCAGGCCCuCGCCCuccuccaaGUCCAg -3'
miRNA:   3'- -CCUGCa----------CGGUCCGGGcGCGGG--------CGGGU- -5'
253 5' -66.1 AC_000008.1 + 13896 1.08 0.00006
Target:  5'- gGGACGUGCCAGGCCCGCGCCCGCCCAc -3'
miRNA:   3'- -CCUGCACGGUCCGGGCGCGGGCGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.