miRNA display CGI


Results 1 - 20 of 95 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25309 3' -57.4 NC_005336.1 + 82133 0.66 0.865575
Target:  5'- gCGGGCAUGuacagcacucgcccGGCCUCc-GCGGUGCa -3'
miRNA:   3'- -GCCUGUACuu------------CUGGAGacCGCCGCGc -5'
25309 3' -57.4 NC_005336.1 + 130943 0.66 0.86483
Target:  5'- gCGGcgucCAUGGcguGGCg-UUGGCGGCGCGa -3'
miRNA:   3'- -GCCu---GUACUu--CUGgaGACCGCCGCGC- -5'
25309 3' -57.4 NC_005336.1 + 76779 0.66 0.86483
Target:  5'- aCGGGCGUGGgcaAGACCgugaccGCGGUGUa -3'
miRNA:   3'- -GCCUGUACU---UCUGGagac--CGCCGCGc -5'
25309 3' -57.4 NC_005336.1 + 130528 0.66 0.86483
Target:  5'- uCGGGCucgccGAGaACCUCgcucGGCGcGCGCGc -3'
miRNA:   3'- -GCCUGuac--UUC-UGGAGa---CCGC-CGCGC- -5'
25309 3' -57.4 NC_005336.1 + 128329 0.66 0.86483
Target:  5'- cCGGucaGCAgcgaGAAGAgCgUCgucGGCGGCGCGc -3'
miRNA:   3'- -GCC---UGUa---CUUCU-GgAGa--CCGCCGCGC- -5'
25309 3' -57.4 NC_005336.1 + 16890 0.66 0.86483
Target:  5'- gCGcGCAUGGAGACgCUgCUGGCcuucGCGCu -3'
miRNA:   3'- -GCcUGUACUUCUG-GA-GACCGc---CGCGc -5'
25309 3' -57.4 NC_005336.1 + 46720 0.66 0.86483
Target:  5'- uCGGugGUGAGccuggagcccGACCUCgaggacaacGUGGUGCGg -3'
miRNA:   3'- -GCCugUACUU----------CUGGAGac-------CGCCGCGC- -5'
25309 3' -57.4 NC_005336.1 + 14740 0.66 0.861828
Target:  5'- uGGGCgAUGAGGugcgugaguuccuCCUCcaUGGCGGCGg- -3'
miRNA:   3'- gCCUG-UACUUCu------------GGAG--ACCGCCGCgc -5'
25309 3' -57.4 NC_005336.1 + 110021 0.66 0.857264
Target:  5'- gCGGGCGUGGAGGUCUCcgacaagcucgUGgacgcgcucGCGGCGCu -3'
miRNA:   3'- -GCCUGUACUUCUGGAG-----------AC---------CGCCGCGc -5'
25309 3' -57.4 NC_005336.1 + 76331 0.66 0.857264
Target:  5'- uCGGGCA-GAcGcCgCUCUucaacGGCGGCGCGc -3'
miRNA:   3'- -GCCUGUaCUuCuG-GAGA-----CCGCCGCGC- -5'
25309 3' -57.4 NC_005336.1 + 36599 0.66 0.857264
Target:  5'- uGGACAcggugcUGAAGGCgCUC--GCGGuCGCGa -3'
miRNA:   3'- gCCUGU------ACUUCUG-GAGacCGCC-GCGC- -5'
25309 3' -57.4 NC_005336.1 + 93421 0.66 0.857264
Target:  5'- uGGAgCAgGGAGugUUgCUGGaggaGGCGCGg -3'
miRNA:   3'- gCCU-GUaCUUCugGA-GACCg---CCGCGC- -5'
25309 3' -57.4 NC_005336.1 + 15531 0.66 0.857264
Target:  5'- aGGAgGUGGAGagcagcaucgcGCCgcgcGCGGCGCGg -3'
miRNA:   3'- gCCUgUACUUC-----------UGGagacCGCCGCGC- -5'
25309 3' -57.4 NC_005336.1 + 80575 0.66 0.857264
Target:  5'- gCGGGCGaGAAcacguacucguGGCCgaacuccgggaUCUGcGCGGCGCGc -3'
miRNA:   3'- -GCCUGUaCUU-----------CUGG-----------AGAC-CGCCGCGC- -5'
25309 3' -57.4 NC_005336.1 + 42600 0.66 0.857264
Target:  5'- uGGuCGUGAccgAGGCCUgugUGGaCGGCGUGc -3'
miRNA:   3'- gCCuGUACU---UCUGGAg--ACC-GCCGCGC- -5'
25309 3' -57.4 NC_005336.1 + 95453 0.66 0.849499
Target:  5'- gCGGGCuAUGcAGACC-CggaccccGGCGuGCGCGa -3'
miRNA:   3'- -GCCUG-UACuUCUGGaGa------CCGC-CGCGC- -5'
25309 3' -57.4 NC_005336.1 + 68299 0.66 0.849499
Target:  5'- gCGGGCGUGcgug---CUGGCGcGCGCGg -3'
miRNA:   3'- -GCCUGUACuucuggaGACCGC-CGCGC- -5'
25309 3' -57.4 NC_005336.1 + 64562 0.66 0.849499
Target:  5'- uGGA--UGAGGcGCUgcgCgUGGCGGCGCGc -3'
miRNA:   3'- gCCUguACUUC-UGGa--G-ACCGCCGCGC- -5'
25309 3' -57.4 NC_005336.1 + 26542 0.66 0.847923
Target:  5'- aGGGCGgcuucaccguGGACCUCgcggacuccGCGGCGCGc -3'
miRNA:   3'- gCCUGUacu-------UCUGGAGac-------CGCCGCGC- -5'
25309 3' -57.4 NC_005336.1 + 55550 0.66 0.846339
Target:  5'- uCGGACAUGggGAUCUCcacccagucgccgGGCaGCagGUGg -3'
miRNA:   3'- -GCCUGUACuuCUGGAGa------------CCGcCG--CGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.