miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25309 3' -57.4 NC_005336.1 + 64562 0.66 0.849499
Target:  5'- uGGA--UGAGGcGCUgcgCgUGGCGGCGCGc -3'
miRNA:   3'- gCCUguACUUC-UGGa--G-ACCGCCGCGC- -5'
25309 3' -57.4 NC_005336.1 + 131251 0.66 0.825068
Target:  5'- -cGACGUGAAcauGCCg--GGCGGCGUGc -3'
miRNA:   3'- gcCUGUACUUc--UGGagaCCGCCGCGC- -5'
25309 3' -57.4 NC_005336.1 + 68377 0.66 0.833394
Target:  5'- gCGGGCGccGgcGGCCgcgCUGuucGCGGCGCu -3'
miRNA:   3'- -GCCUGUa-CuuCUGGa--GAC---CGCCGCGc -5'
25309 3' -57.4 NC_005336.1 + 134117 0.66 0.84154
Target:  5'- gCGGcgcucGCA--GAGACg-CUGGCGGCGCu -3'
miRNA:   3'- -GCC-----UGUacUUCUGgaGACCGCCGCGc -5'
25309 3' -57.4 NC_005336.1 + 128329 0.66 0.86483
Target:  5'- cCGGucaGCAgcgaGAAGAgCgUCgucGGCGGCGCGc -3'
miRNA:   3'- -GCC---UGUa---CUUCU-GgAGa--CCGCCGCGC- -5'
25309 3' -57.4 NC_005336.1 + 83151 0.66 0.824225
Target:  5'- -aGGCAUGAgcacgcugucggaAGACgaCUGcGCGGCGCu -3'
miRNA:   3'- gcCUGUACU-------------UCUGgaGAC-CGCCGCGc -5'
25309 3' -57.4 NC_005336.1 + 131109 0.66 0.825068
Target:  5'- aGGcCAUGcuGACCUggGGCGuGCGCc -3'
miRNA:   3'- gCCuGUACuuCUGGAgaCCGC-CGCGc -5'
25309 3' -57.4 NC_005336.1 + 75137 0.66 0.825068
Target:  5'- gCGGACcagccGGAGucguCCUCcaGCGGCGCGa -3'
miRNA:   3'- -GCCUGua---CUUCu---GGAGacCGCCGCGC- -5'
25309 3' -57.4 NC_005336.1 + 15531 0.66 0.857264
Target:  5'- aGGAgGUGGAGagcagcaucgcGCCgcgcGCGGCGCGg -3'
miRNA:   3'- gCCUgUACUUC-----------UGGagacCGCCGCGC- -5'
25309 3' -57.4 NC_005336.1 + 130528 0.66 0.86483
Target:  5'- uCGGGCucgccGAGaACCUCgcucGGCGcGCGCGc -3'
miRNA:   3'- -GCCUGuac--UUC-UGGAGa---CCGC-CGCGC- -5'
25309 3' -57.4 NC_005336.1 + 80575 0.66 0.857264
Target:  5'- gCGGGCGaGAAcacguacucguGGCCgaacuccgggaUCUGcGCGGCGCGc -3'
miRNA:   3'- -GCCUGUaCUU-----------CUGG-----------AGAC-CGCCGCGC- -5'
25309 3' -57.4 NC_005336.1 + 82133 0.66 0.865575
Target:  5'- gCGGGCAUGuacagcacucgcccGGCCUCc-GCGGUGCa -3'
miRNA:   3'- -GCCUGUACuu------------CUGGAGacCGCCGCGc -5'
25309 3' -57.4 NC_005336.1 + 42600 0.66 0.857264
Target:  5'- uGGuCGUGAccgAGGCCUgugUGGaCGGCGUGc -3'
miRNA:   3'- gCCuGUACU---UCUGGAg--ACC-GCCGCGC- -5'
25309 3' -57.4 NC_005336.1 + 68299 0.66 0.849499
Target:  5'- gCGGGCGUGcgug---CUGGCGcGCGCGg -3'
miRNA:   3'- -GCCUGUACuucuggaGACCGC-CGCGC- -5'
25309 3' -57.4 NC_005336.1 + 93421 0.66 0.857264
Target:  5'- uGGAgCAgGGAGugUUgCUGGaggaGGCGCGg -3'
miRNA:   3'- gCCU-GUaCUUCugGA-GACCg---CCGCGC- -5'
25309 3' -57.4 NC_005336.1 + 46720 0.66 0.86483
Target:  5'- uCGGugGUGAGccuggagcccGACCUCgaggacaacGUGGUGCGg -3'
miRNA:   3'- -GCCugUACUU----------CUGGAGac-------CGCCGCGC- -5'
25309 3' -57.4 NC_005336.1 + 16890 0.66 0.86483
Target:  5'- gCGcGCAUGGAGACgCUgCUGGCcuucGCGCu -3'
miRNA:   3'- -GCcUGUACUUCUG-GA-GACCGc---CGCGc -5'
25309 3' -57.4 NC_005336.1 + 130943 0.66 0.86483
Target:  5'- gCGGcgucCAUGGcguGGCg-UUGGCGGCGCGa -3'
miRNA:   3'- -GCCu---GUACUu--CUGgaGACCGCCGCGC- -5'
25309 3' -57.4 NC_005336.1 + 14740 0.66 0.861828
Target:  5'- uGGGCgAUGAGGugcgugaguuccuCCUCcaUGGCGGCGg- -3'
miRNA:   3'- gCCUG-UACUUCu------------GGAG--ACCGCCGCgc -5'
25309 3' -57.4 NC_005336.1 + 76779 0.66 0.86483
Target:  5'- aCGGGCGUGGgcaAGACCgugaccGCGGUGUa -3'
miRNA:   3'- -GCCUGUACU---UCUGGagac--CGCCGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.