miRNA display CGI


Results 21 - 40 of 95 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25309 3' -57.4 NC_005336.1 + 134117 0.66 0.84154
Target:  5'- gCGGcgcucGCA--GAGACg-CUGGCGGCGCu -3'
miRNA:   3'- -GCC-----UGUacUUCUGgaGACCGCCGCGc -5'
25309 3' -57.4 NC_005336.1 + 46363 0.66 0.833394
Target:  5'- --cGCGcGAGGACCUCguggaGGCgcuGGCGCGg -3'
miRNA:   3'- gccUGUaCUUCUGGAGa----CCG---CCGCGC- -5'
25309 3' -57.4 NC_005336.1 + 68377 0.66 0.833394
Target:  5'- gCGGGCGccGgcGGCCgcgCUGuucGCGGCGCu -3'
miRNA:   3'- -GCCUGUa-CuuCUGGa--GAC---CGCCGCGc -5'
25309 3' -57.4 NC_005336.1 + 131251 0.66 0.825068
Target:  5'- -cGACGUGAAcauGCCg--GGCGGCGUGc -3'
miRNA:   3'- gcCUGUACUUc--UGGagaCCGCCGCGC- -5'
25309 3' -57.4 NC_005336.1 + 75137 0.66 0.825068
Target:  5'- gCGGACcagccGGAGucguCCUCcaGCGGCGCGa -3'
miRNA:   3'- -GCCUGua---CUUCu---GGAGacCGCCGCGC- -5'
25309 3' -57.4 NC_005336.1 + 131109 0.66 0.825068
Target:  5'- aGGcCAUGcuGACCUggGGCGuGCGCc -3'
miRNA:   3'- gCCuGUACuuCUGGAgaCCGC-CGCGc -5'
25309 3' -57.4 NC_005336.1 + 42520 0.66 0.825068
Target:  5'- cCGcGCAUGGAGGCCgagaGCGcGCGCGa -3'
miRNA:   3'- -GCcUGUACUUCUGGagacCGC-CGCGC- -5'
25309 3' -57.4 NC_005336.1 + 83151 0.66 0.824225
Target:  5'- -aGGCAUGAgcacgcugucggaAGACgaCUGcGCGGCGCu -3'
miRNA:   3'- gcCUGUACU-------------UCUGgaGAC-CGCCGCGc -5'
25309 3' -57.4 NC_005336.1 + 75243 0.67 0.816569
Target:  5'- gGGACuugucgcggAUGAGGGCCagcagguccucgUCcacggUGGCGGCGCc -3'
miRNA:   3'- gCCUG---------UACUUCUGG------------AG-----ACCGCCGCGc -5'
25309 3' -57.4 NC_005336.1 + 59734 0.67 0.816569
Target:  5'- ----gGUGAAGACgCggCUcGGCGGCGCGc -3'
miRNA:   3'- gccugUACUUCUG-Ga-GA-CCGCCGCGC- -5'
25309 3' -57.4 NC_005336.1 + 6905 0.67 0.81571
Target:  5'- aGGACGUGcugcGGCUgCUGcucgagcGCGGCGCGa -3'
miRNA:   3'- gCCUGUACuu--CUGGaGAC-------CGCCGCGC- -5'
25309 3' -57.4 NC_005336.1 + 79872 0.67 0.807905
Target:  5'- gCGGACAccaucugGGAGACCUCcGGCGaGgaGCu -3'
miRNA:   3'- -GCCUGUa------CUUCUGGAGaCCGC-Cg-CGc -5'
25309 3' -57.4 NC_005336.1 + 73071 0.67 0.802631
Target:  5'- gCGGACGUGGccGcgccugugaacguguACCUCaUGGCGGCGg- -3'
miRNA:   3'- -GCCUGUACUu-C---------------UGGAG-ACCGCCGCgc -5'
25309 3' -57.4 NC_005336.1 + 24076 0.67 0.799085
Target:  5'- uCGGuCGcgGggGGCCuUCUcGGCGGCaauGCGg -3'
miRNA:   3'- -GCCuGUa-CuuCUGG-AGA-CCGCCG---CGC- -5'
25309 3' -57.4 NC_005336.1 + 41151 0.67 0.790116
Target:  5'- uGGGC--GAGGACCUCUuuGUGGUGCu -3'
miRNA:   3'- gCCUGuaCUUCUGGAGAc-CGCCGCGc -5'
25309 3' -57.4 NC_005336.1 + 101463 0.67 0.790116
Target:  5'- gCGGACGcGAAG-CUggaGGCGGUGCGc -3'
miRNA:   3'- -GCCUGUaCUUCuGGagaCCGCCGCGC- -5'
25309 3' -57.4 NC_005336.1 + 75564 0.67 0.787398
Target:  5'- uGGACAUGAccuggaacgAGGCCUCgcuGCGccagaucgugggccGCGCGg -3'
miRNA:   3'- gCCUGUACU---------UCUGGAGac-CGC--------------CGCGC- -5'
25309 3' -57.4 NC_005336.1 + 75316 0.67 0.783754
Target:  5'- aCGGACuucgcgccgcugGAGGAcgacuccggcugguCCgcgCUGGUGGCGCGc -3'
miRNA:   3'- -GCCUGua----------CUUCU--------------GGa--GACCGCCGCGC- -5'
25309 3' -57.4 NC_005336.1 + 85020 0.67 0.781008
Target:  5'- aCGuACAUGAccGACCUCUGGaagucccaggGGCGCa -3'
miRNA:   3'- -GCcUGUACUu-CUGGAGACCg---------CCGCGc -5'
25309 3' -57.4 NC_005336.1 + 99839 0.67 0.781008
Target:  5'- aGGACAU--GGACCUgc-GCGGCGUGu -3'
miRNA:   3'- gCCUGUAcuUCUGGAgacCGCCGCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.