miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25309 5' -57.6 NC_005336.1 + 79974 0.66 0.768824
Target:  5'- -aCGCUGGCgCGCC--GCACGGCgUCa- -3'
miRNA:   3'- gaGCGACCG-GUGGucUGUGUCG-AGau -5'
25309 5' -57.6 NC_005336.1 + 66834 0.67 0.729762
Target:  5'- aUCGCguccauggUGGCCAcggacCCGGACGCGGCg--- -3'
miRNA:   3'- gAGCG--------ACCGGU-----GGUCUGUGUCGagau -5'
25309 5' -57.6 NC_005336.1 + 71376 0.67 0.729762
Target:  5'- uCUCGCUGGCgcccaCGCCcGACGCGGUc--- -3'
miRNA:   3'- -GAGCGACCG-----GUGGuCUGUGUCGagau -5'
25309 5' -57.6 NC_005336.1 + 113036 0.67 0.729762
Target:  5'- -gUGCUcGGCC-CCAGcGCGCAGUUCa- -3'
miRNA:   3'- gaGCGA-CCGGuGGUC-UGUGUCGAGau -5'
25309 5' -57.6 NC_005336.1 + 88906 0.67 0.739682
Target:  5'- -gCGCUGGUgcUGCgAGGCGCGGaCUCUGu -3'
miRNA:   3'- gaGCGACCG--GUGgUCUGUGUC-GAGAU- -5'
25309 5' -57.6 NC_005336.1 + 25778 0.67 0.743623
Target:  5'- cCUCGCggucgaagaUGGCCACCucggcgacgagcuccGGcgaGCGCGGCUCg- -3'
miRNA:   3'- -GAGCG---------ACCGGUGG---------------UC---UGUGUCGAGau -5'
25309 5' -57.6 NC_005336.1 + 25400 0.66 0.76787
Target:  5'- gCUCGCcGGCCACCGccgcgucGAUcucCAGCUCc- -3'
miRNA:   3'- -GAGCGaCCGGUGGU-------CUGu--GUCGAGau -5'
25309 5' -57.6 NC_005336.1 + 43856 0.66 0.76787
Target:  5'- -gCGCUGGCCAaCGGAUGCgacuucuuccccgGGCUCg- -3'
miRNA:   3'- gaGCGACCGGUgGUCUGUG-------------UCGAGau -5'
25309 5' -57.6 NC_005336.1 + 15117 0.66 0.768824
Target:  5'- aCUgGCUGGCCG-CGGAC--GGCUCg- -3'
miRNA:   3'- -GAgCGACCGGUgGUCUGugUCGAGau -5'
25309 5' -57.6 NC_005336.1 + 126598 0.67 0.719756
Target:  5'- -aCGCgcGGCCGCCAGcucgucgacuucAUGCGGCUCg- -3'
miRNA:   3'- gaGCGa-CCGGUGGUC------------UGUGUCGAGau -5'
25309 5' -57.6 NC_005336.1 + 130539 0.67 0.719756
Target:  5'- --gGCUGGCCgagaGCCGGACgACAG-UCUAc -3'
miRNA:   3'- gagCGACCGG----UGGUCUG-UGUCgAGAU- -5'
25309 5' -57.6 NC_005336.1 + 22430 0.67 0.709673
Target:  5'- -gUGCUGGaCCGCgGGGCgcucacGCGGCUCUc -3'
miRNA:   3'- gaGCGACC-GGUGgUCUG------UGUCGAGAu -5'
25309 5' -57.6 NC_005336.1 + 68456 0.72 0.457404
Target:  5'- -cCGCcgGGCgCGCCgccgcGGACGCGGCUCUGc -3'
miRNA:   3'- gaGCGa-CCG-GUGG-----UCUGUGUCGAGAU- -5'
25309 5' -57.6 NC_005336.1 + 115472 0.71 0.495577
Target:  5'- aCUCGCaccacccgcucUGGCCGC--GACACGGCUCa- -3'
miRNA:   3'- -GAGCG-----------ACCGGUGguCUGUGUCGAGau -5'
25309 5' -57.6 NC_005336.1 + 51131 0.71 0.505347
Target:  5'- -gCGCUGGUCACuCGGuACGCGGgUCUGc -3'
miRNA:   3'- gaGCGACCGGUG-GUC-UGUGUCgAGAU- -5'
25309 5' -57.6 NC_005336.1 + 134074 0.71 0.525128
Target:  5'- -cCGCU-GCCACgCGGACGCAGCUg-- -3'
miRNA:   3'- gaGCGAcCGGUG-GUCUGUGUCGAgau -5'
25309 5' -57.6 NC_005336.1 + 131905 0.69 0.615956
Target:  5'- -gCGCUGGaCGCCGGGCccagcgaggccucGCGGCUCg- -3'
miRNA:   3'- gaGCGACCgGUGGUCUG-------------UGUCGAGau -5'
25309 5' -57.6 NC_005336.1 + 77751 0.69 0.641866
Target:  5'- gCUCGCUGGCgACCAuGACGgcgcuguccuugagcCAGCUg-- -3'
miRNA:   3'- -GAGCGACCGgUGGU-CUGU---------------GUCGAgau -5'
25309 5' -57.6 NC_005336.1 + 3932 0.68 0.648083
Target:  5'- --aGCgGGCCGCCGcGGCGCAGCg--- -3'
miRNA:   3'- gagCGaCCGGUGGU-CUGUGUCGagau -5'
25309 5' -57.6 NC_005336.1 + 138190 0.68 0.658432
Target:  5'- aCUCGCUcGCuCGCuCGGACGCAGgUCg- -3'
miRNA:   3'- -GAGCGAcCG-GUG-GUCUGUGUCgAGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.