miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25323 5' -55 NC_005336.1 + 104310 0.65 0.921208
Target:  5'- gUACgccgCGGAGc-GCACGCGcuCGCGGUu -3'
miRNA:   3'- -AUGa---GCCUCuuCGUGCGCauGCGCUA- -5'
25323 5' -55 NC_005336.1 + 134541 0.65 0.921208
Target:  5'- gGCUCGcGGGcacguGGCGCGUcaGCGCGGUc -3'
miRNA:   3'- aUGAGC-CUCu----UCGUGCGcaUGCGCUA- -5'
25323 5' -55 NC_005336.1 + 109787 0.65 0.921208
Target:  5'- gUGCUCGaGGAcguGGC-CGCGcACGCGGUc -3'
miRNA:   3'- -AUGAGCcUCU---UCGuGCGCaUGCGCUA- -5'
25323 5' -55 NC_005336.1 + 66849 0.65 0.921208
Target:  5'- gUAgUUGGAGAgcacgcccagcGGCccGCGCGUGCGuCGGUu -3'
miRNA:   3'- -AUgAGCCUCU-----------UCG--UGCGCAUGC-GCUA- -5'
25323 5' -55 NC_005336.1 + 95653 0.65 0.921208
Target:  5'- cGCUCGG-GAAGUaccugggcccGCGCGUcugccGCGCGc- -3'
miRNA:   3'- aUGAGCCuCUUCG----------UGCGCA-----UGCGCua -5'
25323 5' -55 NC_005336.1 + 14333 0.65 0.921208
Target:  5'- -cCUCGGAGAagAGCACGCucaggcaggaGUAgcaGCGGUc -3'
miRNA:   3'- auGAGCCUCU--UCGUGCG----------CAUg--CGCUA- -5'
25323 5' -55 NC_005336.1 + 36342 0.66 0.91538
Target:  5'- gUGCcCGGcGAGGCGCGCGaggACGCc-- -3'
miRNA:   3'- -AUGaGCCuCUUCGUGCGCa--UGCGcua -5'
25323 5' -55 NC_005336.1 + 1075 0.66 0.91538
Target:  5'- -uUUCGGAGGAGCGCG-GaGgGCGGg -3'
miRNA:   3'- auGAGCCUCUUCGUGCgCaUgCGCUa -5'
25323 5' -55 NC_005336.1 + 859 0.66 0.91538
Target:  5'- -uUUCGGAGGAGCGCG-GaGgGCGGg -3'
miRNA:   3'- auGAGCCUCUUCGUGCgCaUgCGCUa -5'
25323 5' -55 NC_005336.1 + 139104 0.66 0.91538
Target:  5'- -uUUCGGAGGAGCGCG-GaGgGCGGg -3'
miRNA:   3'- auGAGCCUCUUCGUGCgCaUgCGCUa -5'
25323 5' -55 NC_005336.1 + 22049 0.66 0.91538
Target:  5'- cGCUCGuAGAGcguGCGCGCGggccgguCGCGGUa -3'
miRNA:   3'- aUGAGCcUCUU---CGUGCGCau-----GCGCUA- -5'
25323 5' -55 NC_005336.1 + 15050 0.66 0.91538
Target:  5'- cGC-CGGAGgcGCGCGCGcgacgACGUGc- -3'
miRNA:   3'- aUGaGCCUCuuCGUGCGCa----UGCGCua -5'
25323 5' -55 NC_005336.1 + 138888 0.66 0.91538
Target:  5'- -uUUCGGAGGAGCGCG-GaGgGCGGg -3'
miRNA:   3'- auGAGCCUCUUCGUGCgCaUgCGCUa -5'
25323 5' -55 NC_005336.1 + 133559 0.66 0.91538
Target:  5'- cGCUUcGAGGAGCcCGUGcGCGCGGc -3'
miRNA:   3'- aUGAGcCUCUUCGuGCGCaUGCGCUa -5'
25323 5' -55 NC_005336.1 + 9615 0.66 0.91538
Target:  5'- cGCaggaGGGGAAgauGCGCGCGaGCGCGGc -3'
miRNA:   3'- aUGag--CCUCUU---CGUGCGCaUGCGCUa -5'
25323 5' -55 NC_005336.1 + 56563 0.66 0.909303
Target:  5'- gAgUCGGGGA---ACGCGUACGgGAg -3'
miRNA:   3'- aUgAGCCUCUucgUGCGCAUGCgCUa -5'
25323 5' -55 NC_005336.1 + 62199 0.66 0.909303
Target:  5'- aACUuugCGGAGGAGCAgccCGCGguCGCGGa -3'
miRNA:   3'- aUGA---GCCUCUUCGU---GCGCauGCGCUa -5'
25323 5' -55 NC_005336.1 + 36266 0.66 0.909303
Target:  5'- cGCUCGGcgcGAcuacgcgcacGGC-CGCGUGCGCGc- -3'
miRNA:   3'- aUGAGCCu--CU----------UCGuGCGCAUGCGCua -5'
25323 5' -55 NC_005336.1 + 67805 0.66 0.909303
Target:  5'- cGCUCGGucGAAacgaugcacGCGCGCGgGCGCGc- -3'
miRNA:   3'- aUGAGCCu-CUU---------CGUGCGCaUGCGCua -5'
25323 5' -55 NC_005336.1 + 101103 0.66 0.908682
Target:  5'- cGCUCGGAcGAcuuccugAGCACcacCGUGCGCGc- -3'
miRNA:   3'- aUGAGCCU-CU-------UCGUGc--GCAUGCGCua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.