miRNA display CGI


Results 1 - 8 of 8 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2533 3' -50 NC_001460.1 + 3154 0.66 0.862175
Target:  5'- cCGACAGUG---UGAGUGUgGUAGCa -3'
miRNA:   3'- cGCUGUCACcagAUUUACAgCGUCGg -5'
2533 3' -50 NC_001460.1 + 2007 0.66 0.879107
Target:  5'- aGCGGCGGcaUGGUC-AAagGcCGC-GCCa -3'
miRNA:   3'- -CGCUGUC--ACCAGaUUuaCaGCGuCGG- -5'
2533 3' -50 NC_001460.1 + 15407 0.66 0.870783
Target:  5'- cGCGgaGCAGcuaGGUUUGcAAuagcUGUUGCGGCCg -3'
miRNA:   3'- -CGC--UGUCa--CCAGAU-UU----ACAGCGUCGG- -5'
2533 3' -50 NC_001460.1 + 17742 0.67 0.825096
Target:  5'- uGCcGCAGUGGUCUuacAUGcacaUCGcCGGUCa -3'
miRNA:   3'- -CGcUGUCACCAGAuu-UAC----AGC-GUCGG- -5'
2533 3' -50 NC_001460.1 + 30599 0.68 0.794809
Target:  5'- aGUGuCAGagGGUCguaugGAGUGUUGCuGCUg -3'
miRNA:   3'- -CGCuGUCa-CCAGa----UUUACAGCGuCGG- -5'
2533 3' -50 NC_001460.1 + 15254 0.69 0.729358
Target:  5'- aUGGCGGUGGUUg----GUCuacgccggcgacGCAGCCg -3'
miRNA:   3'- cGCUGUCACCAGauuuaCAG------------CGUCGG- -5'
2533 3' -50 NC_001460.1 + 17476 0.71 0.612809
Target:  5'- cGCGAUAGUGGguUCUGGcaaagGagGCAGCUc -3'
miRNA:   3'- -CGCUGUCACC--AGAUUua---CagCGUCGG- -5'
2533 3' -50 NC_001460.1 + 26374 1.16 0.000682
Target:  5'- gGCGACAGUGGUCUAAAUGUCGCAGCCg -3'
miRNA:   3'- -CGCUGUCACCAGAUUUACAGCGUCGG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.