miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25334 3' -58 NC_005336.1 + 28860 0.66 0.817362
Target:  5'- cAACGCGCUcGUGCGga-UCUCgcgccugaagauCUCGGAc -3'
miRNA:   3'- -UUGCGCGA-CGCGCagaAGAG------------GAGCCU- -5'
25334 3' -58 NC_005336.1 + 51544 0.66 0.817362
Target:  5'- -uCGCGCuUGCGCucGUCUUCUUC-CGcGAc -3'
miRNA:   3'- uuGCGCG-ACGCG--CAGAAGAGGaGC-CU- -5'
25334 3' -58 NC_005336.1 + 29122 0.66 0.808646
Target:  5'- -cUGCGCUGCGCagcgCUUC-CCUgaCGGGc -3'
miRNA:   3'- uuGCGCGACGCGca--GAAGaGGA--GCCU- -5'
25334 3' -58 NC_005336.1 + 67651 0.66 0.805114
Target:  5'- cGCGCGCcGCGCGcaacaccagcgUCUCCgCGGGc -3'
miRNA:   3'- uUGCGCGaCGCGCaga--------AGAGGaGCCU- -5'
25334 3' -58 NC_005336.1 + 114568 0.66 0.799769
Target:  5'- cACGCGC-GCGCGUUugUUCgcgCgCUCGGc -3'
miRNA:   3'- uUGCGCGaCGCGCAG--AAGa--G-GAGCCu -5'
25334 3' -58 NC_005336.1 + 29578 0.66 0.799769
Target:  5'- --gGCGCUGCGCGUgCUgggugcgCUgCUgCGGGc -3'
miRNA:   3'- uugCGCGACGCGCA-GAa------GAgGA-GCCU- -5'
25334 3' -58 NC_005336.1 + 80364 0.66 0.799769
Target:  5'- cGGCGCGCaGCGCcagCcgCUCCgCGGAc -3'
miRNA:   3'- -UUGCGCGaCGCGca-GaaGAGGaGCCU- -5'
25334 3' -58 NC_005336.1 + 29854 0.66 0.799769
Target:  5'- -uCGCGCU-CGCGcCggCUCC-CGGAg -3'
miRNA:   3'- uuGCGCGAcGCGCaGaaGAGGaGCCU- -5'
25334 3' -58 NC_005336.1 + 19567 0.66 0.797976
Target:  5'- gAGCGCGCcGCaGCGccgccgcgagagcUCUUCgagcaggUCCUCGGGc -3'
miRNA:   3'- -UUGCGCGaCG-CGC-------------AGAAG-------AGGAGCCU- -5'
25334 3' -58 NC_005336.1 + 95799 0.66 0.796176
Target:  5'- -cUGCGCcaagcacauggacGCGCG-CUUCUgCUCGGAg -3'
miRNA:   3'- uuGCGCGa------------CGCGCaGAAGAgGAGCCU- -5'
25334 3' -58 NC_005336.1 + 39135 0.66 0.790742
Target:  5'- gGugGCGCagUGCGCGcUCUUCg---CGGAg -3'
miRNA:   3'- -UugCGCG--ACGCGC-AGAAGaggaGCCU- -5'
25334 3' -58 NC_005336.1 + 130675 0.66 0.790742
Target:  5'- cGCGCGCgGCGCGagagCaggCUCCgcggCGGGc -3'
miRNA:   3'- uUGCGCGaCGCGCa---Gaa-GAGGa---GCCU- -5'
25334 3' -58 NC_005336.1 + 103825 0.66 0.781572
Target:  5'- -cCGCGCcGCGCGcCa--UCCUCGGc -3'
miRNA:   3'- uuGCGCGaCGCGCaGaagAGGAGCCu -5'
25334 3' -58 NC_005336.1 + 28787 0.67 0.762838
Target:  5'- cACGCGCUGCGCGUCcaugugCCgcgCGc- -3'
miRNA:   3'- uUGCGCGACGCGCAGaaga--GGa--GCcu -5'
25334 3' -58 NC_005336.1 + 45656 0.67 0.762838
Target:  5'- -cUGCGCUGUccGCGUCcgccggcaUCUCCUCGa- -3'
miRNA:   3'- uuGCGCGACG--CGCAGa-------AGAGGAGCcu -5'
25334 3' -58 NC_005336.1 + 38126 0.67 0.762838
Target:  5'- cGCGCGCUGgGCGagcggaacugcUCUUggCuCUCGGAc -3'
miRNA:   3'- uUGCGCGACgCGC-----------AGAAgaG-GAGCCU- -5'
25334 3' -58 NC_005336.1 + 9670 0.67 0.753293
Target:  5'- gAGCGC-CUGCGCGgccgCggcggcggcCUCCUCGGc -3'
miRNA:   3'- -UUGCGcGACGCGCa---Gaa-------GAGGAGCCu -5'
25334 3' -58 NC_005336.1 + 109834 0.67 0.753293
Target:  5'- cAGCGcCGCgaGCGCGUCcacgagCUUgUCGGAg -3'
miRNA:   3'- -UUGC-GCGa-CGCGCAGaa----GAGgAGCCU- -5'
25334 3' -58 NC_005336.1 + 19095 0.67 0.753293
Target:  5'- gGAUGCGCUcgaGCGCGaaggcCUUCauggUCUCGGAg -3'
miRNA:   3'- -UUGCGCGA---CGCGCa----GAAGa---GGAGCCU- -5'
25334 3' -58 NC_005336.1 + 60032 0.67 0.743642
Target:  5'- -gUGUGCcGCGCGgcgCUgcaUCUCCuUCGGAc -3'
miRNA:   3'- uuGCGCGaCGCGCa--GA---AGAGG-AGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.