miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25334 3' -58 NC_005336.1 + 9670 0.67 0.753293
Target:  5'- gAGCGC-CUGCGCGgccgCggcggcggcCUCCUCGGc -3'
miRNA:   3'- -UUGCGcGACGCGCa---Gaa-------GAGGAGCCu -5'
25334 3' -58 NC_005336.1 + 17195 0.69 0.62282
Target:  5'- -uCGCGCcaucgGCGCGgc--CUCCUCGGGc -3'
miRNA:   3'- uuGCGCGa----CGCGCagaaGAGGAGCCU- -5'
25334 3' -58 NC_005336.1 + 17440 0.7 0.592212
Target:  5'- uGCGCGCgGCGa-UCUcCUUCUCGGAg -3'
miRNA:   3'- uUGCGCGaCGCgcAGAaGAGGAGCCU- -5'
25334 3' -58 NC_005336.1 + 19095 0.67 0.753293
Target:  5'- gGAUGCGCUcgaGCGCGaaggcCUUCauggUCUCGGAg -3'
miRNA:   3'- -UUGCGCGA---CGCGCa----GAAGa---GGAGCCU- -5'
25334 3' -58 NC_005336.1 + 19567 0.66 0.797976
Target:  5'- gAGCGCGCcGCaGCGccgccgcgagagcUCUUCgagcaggUCCUCGGGc -3'
miRNA:   3'- -UUGCGCGaCG-CGC-------------AGAAG-------AGGAGCCU- -5'
25334 3' -58 NC_005336.1 + 20889 0.67 0.724056
Target:  5'- cGACGCGCUGCG-GUaccugCUCUUCGcGGu -3'
miRNA:   3'- -UUGCGCGACGCgCAgaa--GAGGAGC-CU- -5'
25334 3' -58 NC_005336.1 + 24452 0.69 0.633047
Target:  5'- aGACGCuGCUGCgGCG-CUUC-CgUCGGAu -3'
miRNA:   3'- -UUGCG-CGACG-CGCaGAAGaGgAGCCU- -5'
25334 3' -58 NC_005336.1 + 26894 0.67 0.724056
Target:  5'- cACGCGCaGCaGCGUCa---CCUCGGGa -3'
miRNA:   3'- uUGCGCGaCG-CGCAGaagaGGAGCCU- -5'
25334 3' -58 NC_005336.1 + 28787 0.67 0.762838
Target:  5'- cACGCGCUGCGCGUCcaugugCCgcgCGc- -3'
miRNA:   3'- uUGCGCGACGCGCAGaaga--GGa--GCcu -5'
25334 3' -58 NC_005336.1 + 28860 0.66 0.817362
Target:  5'- cAACGCGCUcGUGCGga-UCUCgcgccugaagauCUCGGAc -3'
miRNA:   3'- -UUGCGCGA-CGCGCagaAGAG------------GAGCCU- -5'
25334 3' -58 NC_005336.1 + 29122 0.66 0.808646
Target:  5'- -cUGCGCUGCGCagcgCUUC-CCUgaCGGGc -3'
miRNA:   3'- uuGCGCGACGCGca--GAAGaGGA--GCCU- -5'
25334 3' -58 NC_005336.1 + 29578 0.66 0.799769
Target:  5'- --gGCGCUGCGCGUgCUgggugcgCUgCUgCGGGc -3'
miRNA:   3'- uugCGCGACGCGCA-GAa------GAgGA-GCCU- -5'
25334 3' -58 NC_005336.1 + 29854 0.66 0.799769
Target:  5'- -uCGCGCU-CGCGcCggCUCC-CGGAg -3'
miRNA:   3'- uuGCGCGAcGCGCaGaaGAGGaGCCU- -5'
25334 3' -58 NC_005336.1 + 31658 0.68 0.68097
Target:  5'- --gGCGUUGCGCuccacgaucauccgGaUCgUCUCCUCGGAu -3'
miRNA:   3'- uugCGCGACGCG--------------C-AGaAGAGGAGCCU- -5'
25334 3' -58 NC_005336.1 + 38126 0.67 0.762838
Target:  5'- cGCGCGCUGgGCGagcggaacugcUCUUggCuCUCGGAc -3'
miRNA:   3'- uUGCGCGACgCGC-----------AGAAgaG-GAGCCU- -5'
25334 3' -58 NC_005336.1 + 38166 0.72 0.437246
Target:  5'- gAACGCGC-GC-CGUCg-CUCCUCGGGg -3'
miRNA:   3'- -UUGCGCGaCGcGCAGaaGAGGAGCCU- -5'
25334 3' -58 NC_005336.1 + 38302 1.06 0.002335
Target:  5'- cAACGCGCUGCGCGUCUUCUCCUCGGAg -3'
miRNA:   3'- -UUGCGCGACGCGCAGAAGAGGAGCCU- -5'
25334 3' -58 NC_005336.1 + 39135 0.66 0.790742
Target:  5'- gGugGCGCagUGCGCGcUCUUCg---CGGAg -3'
miRNA:   3'- -UugCGCG--ACGCGC-AGAAGaggaGCCU- -5'
25334 3' -58 NC_005336.1 + 40156 0.67 0.733893
Target:  5'- uAGCGCGUcGCgGCGUCgccgacgaCUUCUCGGGc -3'
miRNA:   3'- -UUGCGCGaCG-CGCAGaa------GAGGAGCCU- -5'
25334 3' -58 NC_005336.1 + 42683 0.77 0.231983
Target:  5'- cGCGCGCUGCGCGagaUCUUCUaccgCCUCGa- -3'
miRNA:   3'- uUGCGCGACGCGC---AGAAGA----GGAGCcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.