miRNA display CGI


Results 1 - 20 of 257 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25334 5' -62 NC_005336.1 + 134129 0.65 0.645852
Target:  5'- gCGCGCGGccagccGGcGCaGGAAGcGCGCGaggaagacgucguaCAGCg -3'
miRNA:   3'- -GCGCGCU------CC-CGaCCUUC-CGCGC--------------GUCG- -5'
25334 5' -62 NC_005336.1 + 59876 0.65 0.644862
Target:  5'- aGCucuaCGA-GGCgaucaucaaggagGGAGGGCuGCGCAGCg -3'
miRNA:   3'- gCGc---GCUcCCGa------------CCUUCCG-CGCGUCG- -5'
25334 5' -62 NC_005336.1 + 61798 0.66 0.63892
Target:  5'- gCGCGCGcGGGCgUGGu-GGUGC-CcGCg -3'
miRNA:   3'- -GCGCGCuCCCG-ACCuuCCGCGcGuCG- -5'
25334 5' -62 NC_005336.1 + 42135 0.66 0.63892
Target:  5'- uGCGCGAGcucGC-GGAcGcGCGCGCguGGCg -3'
miRNA:   3'- gCGCGCUCc--CGaCCUuC-CGCGCG--UCG- -5'
25334 5' -62 NC_005336.1 + 130804 0.66 0.63892
Target:  5'- uCGCGCGGGaGCacGcAGuCGCGCAGCg -3'
miRNA:   3'- -GCGCGCUCcCGacCuUCcGCGCGUCG- -5'
25334 5' -62 NC_005336.1 + 28222 0.66 0.63892
Target:  5'- gCGgGCGAGGaGCcGGucacGGGCGUG-GGCu -3'
miRNA:   3'- -GCgCGCUCC-CGaCCu---UCCGCGCgUCG- -5'
25334 5' -62 NC_005336.1 + 6199 0.66 0.63892
Target:  5'- gCGCGCacGAGcaguuccgucGGC-GGccGGCGCGCgAGCa -3'
miRNA:   3'- -GCGCG--CUC----------CCGaCCuuCCGCGCG-UCG- -5'
25334 5' -62 NC_005336.1 + 54169 0.66 0.63892
Target:  5'- gGCGCGuccggcccGGGCgcGGucGGCGgCGCcGCg -3'
miRNA:   3'- gCGCGCu-------CCCGa-CCuuCCGC-GCGuCG- -5'
25334 5' -62 NC_005336.1 + 136612 0.66 0.637929
Target:  5'- cCGCGCucGGaguggcugcggcaGCUGGAGcGGCuGCGCcGCg -3'
miRNA:   3'- -GCGCGcuCC-------------CGACCUU-CCG-CGCGuCG- -5'
25334 5' -62 NC_005336.1 + 32973 0.66 0.637929
Target:  5'- aGCGCGAGGaccugacGCUGGc-GGCGCuCAuggGCu -3'
miRNA:   3'- gCGCGCUCC-------CGACCuuCCGCGcGU---CG- -5'
25334 5' -62 NC_005336.1 + 3351 0.66 0.637929
Target:  5'- cCGCGCucGGaguggcugcggcaGCUGGAGcGGCuGCGCcGCg -3'
miRNA:   3'- -GCGCGcuCC-------------CGACCUU-CCG-CGCGuCG- -5'
25334 5' -62 NC_005336.1 + 39776 0.66 0.635948
Target:  5'- aGCGCGAGaGGCUGaugccgaagccgucGAcguacuccucGGuGCGgCGCAGCn -3'
miRNA:   3'- gCGCGCUC-CCGAC--------------CU----------UC-CGC-GCGUCG- -5'
25334 5' -62 NC_005336.1 + 67998 0.66 0.632976
Target:  5'- cCGCGCcGGGcgccgcgcuuguguuGCUGGAcgcacucgGGGCGgugGCAGCg -3'
miRNA:   3'- -GCGCGcUCC---------------CGACCU--------UCCGCg--CGUCG- -5'
25334 5' -62 NC_005336.1 + 133866 0.66 0.629013
Target:  5'- cCGCgGCGAuGuGCgGGuacGCGCGCAGCa -3'
miRNA:   3'- -GCG-CGCUcC-CGaCCuucCGCGCGUCG- -5'
25334 5' -62 NC_005336.1 + 99518 0.66 0.629013
Target:  5'- gCGCGCGAcGcGCacgccGGAGgcGGCGCacGCAGCg -3'
miRNA:   3'- -GCGCGCUcC-CGa----CCUU--CCGCG--CGUCG- -5'
25334 5' -62 NC_005336.1 + 92944 0.66 0.629013
Target:  5'- gCGCGCGAGcGaGCUGaacaaGCGCGUGGUc -3'
miRNA:   3'- -GCGCGCUC-C-CGACcuuc-CGCGCGUCG- -5'
25334 5' -62 NC_005336.1 + 87946 0.66 0.629013
Target:  5'- uGCGCGAguccGGGCUccgcGcGAu--CGCGCAGCa -3'
miRNA:   3'- gCGCGCU----CCCGA----C-CUuccGCGCGUCG- -5'
25334 5' -62 NC_005336.1 + 51655 0.66 0.629013
Target:  5'- -uCGCGAGGua-GGAcucuGCGCGCAGCa -3'
miRNA:   3'- gcGCGCUCCcgaCCUuc--CGCGCGUCG- -5'
25334 5' -62 NC_005336.1 + 127839 0.66 0.629013
Target:  5'- gCGCGCGGcuGCUGGccgcGGGCGCGgAccccGCg -3'
miRNA:   3'- -GCGCGCUccCGACCu---UCCGCGCgU----CG- -5'
25334 5' -62 NC_005336.1 + 79951 0.66 0.629013
Target:  5'- gCGCGCGGuGGUccgUGGcgaacacgcuGGCGCGCcGCa -3'
miRNA:   3'- -GCGCGCUcCCG---ACCuu--------CCGCGCGuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.