miRNA display CGI


Results 1 - 20 of 257 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25334 5' -62 NC_005336.1 + 38339 1.11 0.000513
Target:  5'- gCGCGCGAGGGCUGGAAGGCGCGCAGCg -3'
miRNA:   3'- -GCGCGCUCCCGACCUUCCGCGCGUCG- -5'
25334 5' -62 NC_005336.1 + 68506 0.88 0.023204
Target:  5'- gCGCGCGuucgcgguGGGCUGGuuuGGCGCGCAGCu -3'
miRNA:   3'- -GCGCGCu-------CCCGACCuu-CCGCGCGUCG- -5'
25334 5' -62 NC_005336.1 + 130658 0.85 0.040487
Target:  5'- cCGCGCGAGGuGCUGGAGcGCGUGCuGCg -3'
miRNA:   3'- -GCGCGCUCC-CGACCUUcCGCGCGuCG- -5'
25334 5' -62 NC_005336.1 + 83198 0.83 0.056968
Target:  5'- gGCGCGAgccaGGGCgcgcGGAcgacGGGCGCGCGGCg -3'
miRNA:   3'- gCGCGCU----CCCGa---CCU----UCCGCGCGUCG- -5'
25334 5' -62 NC_005336.1 + 45627 0.83 0.058477
Target:  5'- gGcCGCGGGGGCgGGAacAGGCGCaGCAGCu -3'
miRNA:   3'- gC-GCGCUCCCGaCCU--UCCGCG-CGUCG- -5'
25334 5' -62 NC_005336.1 + 16636 0.81 0.072768
Target:  5'- aCGCGCGAGGcgccgcccuccggcgGCaGGAAGGCGCaggGCAGCg -3'
miRNA:   3'- -GCGCGCUCC---------------CGaCCUUCCGCG---CGUCG- -5'
25334 5' -62 NC_005336.1 + 139214 0.8 0.086295
Target:  5'- uCGUGCaaacacuuGAGGGC-GGAGGGCGgGCAGCu -3'
miRNA:   3'- -GCGCG--------CUCCCGaCCUUCCGCgCGUCG- -5'
25334 5' -62 NC_005336.1 + 749 0.8 0.086295
Target:  5'- uCGUGCaaacacuuGAGGGC-GGAGGGCGgGCAGCu -3'
miRNA:   3'- -GCGCG--------CUCCCGaCCUUCCGCgCGUCG- -5'
25334 5' -62 NC_005336.1 + 130668 0.8 0.093207
Target:  5'- gGCGCGAGagcaGGCUccgcGGcGGGCGCGCGGCc -3'
miRNA:   3'- gCGCGCUC----CCGA----CCuUCCGCGCGUCG- -5'
25334 5' -62 NC_005336.1 + 13975 0.79 0.111144
Target:  5'- cCGCGCGAGGaGCUGGcGGccuucgcGCGCGUGGCc -3'
miRNA:   3'- -GCGCGCUCC-CGACCuUC-------CGCGCGUCG- -5'
25334 5' -62 NC_005336.1 + 105683 0.78 0.120215
Target:  5'- aCGCGCGcGGcGaCUGGGGcGCGCGCAGCu -3'
miRNA:   3'- -GCGCGCuCC-C-GACCUUcCGCGCGUCG- -5'
25334 5' -62 NC_005336.1 + 74685 0.78 0.123285
Target:  5'- uCGuCGCGAGGGCgcgcGGcuccGAGGCGCGCgagAGCg -3'
miRNA:   3'- -GC-GCGCUCCCGa---CC----UUCCGCGCG---UCG- -5'
25334 5' -62 NC_005336.1 + 121704 0.77 0.146892
Target:  5'- gGCGCGAGGGCuUGGAguuGGGCaugGCG-AGCg -3'
miRNA:   3'- gCGCGCUCCCG-ACCU---UCCG---CGCgUCG- -5'
25334 5' -62 NC_005336.1 + 98048 0.77 0.150583
Target:  5'- uCGCGcCGAGGcGCUcgcGGAGcgcGGCGUGCAGCc -3'
miRNA:   3'- -GCGC-GCUCC-CGA---CCUU---CCGCGCGUCG- -5'
25334 5' -62 NC_005336.1 + 16865 0.76 0.154359
Target:  5'- uCGCGCucGAGGaGCUcgGGGAGGCGC-CGGCg -3'
miRNA:   3'- -GCGCG--CUCC-CGA--CCUUCCGCGcGUCG- -5'
25334 5' -62 NC_005336.1 + 127658 0.76 0.162168
Target:  5'- aCGuCGCGGGaucGCaGGAAGGCGUGCAGUg -3'
miRNA:   3'- -GC-GCGCUCc--CGaCCUUCCGCGCGUCG- -5'
25334 5' -62 NC_005336.1 + 136230 0.76 0.162168
Target:  5'- gGCGCGGcGGGCgcggugagGGAAgccGGCGCGCGGg -3'
miRNA:   3'- gCGCGCU-CCCGa-------CCUU---CCGCGCGUCg -5'
25334 5' -62 NC_005336.1 + 59158 0.76 0.162168
Target:  5'- gGCGCGGGcgacGGCUGGAuGGUGCacaagGCGGCg -3'
miRNA:   3'- gCGCGCUC----CCGACCUuCCGCG-----CGUCG- -5'
25334 5' -62 NC_005336.1 + 3733 0.76 0.162168
Target:  5'- gGCGCGGcGGGCgcggugagGGAAgccGGCGCGCGGg -3'
miRNA:   3'- gCGCGCU-CCCGa-------CCUU---CCGCGCGUCg -5'
25334 5' -62 NC_005336.1 + 17725 0.76 0.164984
Target:  5'- aCGCGCGAGGacucaaucgugcgcGCguccGGcgcccAGGCGCGCAGCu -3'
miRNA:   3'- -GCGCGCUCC--------------CGa---CCu----UCCGCGCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.