miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25353 3' -54.3 NC_005336.1 + 57562 0.66 0.936388
Target:  5'- --cUGGUGCUgC-CUGGCGCC-GCGa- -3'
miRNA:   3'- gcaACCACGA-GuGAUCGUGGuCGCac -5'
25353 3' -54.3 NC_005336.1 + 105241 0.66 0.936388
Target:  5'- --aUGGcgacGCUCAucCUGGCGCCGGUGg- -3'
miRNA:   3'- gcaACCa---CGAGU--GAUCGUGGUCGCac -5'
25353 3' -54.3 NC_005336.1 + 114304 0.66 0.934878
Target:  5'- gCGUcGGUGUgcggcacgcggcugUCGCUGGCGgCGGCGc- -3'
miRNA:   3'- -GCAaCCACG--------------AGUGAUCGUgGUCGCac -5'
25353 3' -54.3 NC_005336.1 + 100234 0.66 0.931267
Target:  5'- uGgaGGUGCUCGacGGCACgGugcGCGUGg -3'
miRNA:   3'- gCaaCCACGAGUgaUCGUGgU---CGCAC- -5'
25353 3' -54.3 NC_005336.1 + 9352 0.66 0.925896
Target:  5'- cCGgaGGUGUgcCGC-AGCGCaCGGCGUGu -3'
miRNA:   3'- -GCaaCCACGa-GUGaUCGUG-GUCGCAC- -5'
25353 3' -54.3 NC_005336.1 + 49780 0.66 0.920273
Target:  5'- uGgaGGUGCUCAuCUGGaagACCAGC-UGg -3'
miRNA:   3'- gCaaCCACGAGU-GAUCg--UGGUCGcAC- -5'
25353 3' -54.3 NC_005336.1 + 55668 0.67 0.9144
Target:  5'- ---cGGUGgUCugUccucccgcuGCGCCGGCGUGu -3'
miRNA:   3'- gcaaCCACgAGugAu--------CGUGGUCGCAC- -5'
25353 3' -54.3 NC_005336.1 + 21116 0.67 0.908278
Target:  5'- cCGUUGc-GCUUGC--GCGCCGGCGUGc -3'
miRNA:   3'- -GCAACcaCGAGUGauCGUGGUCGCAC- -5'
25353 3' -54.3 NC_005336.1 + 61929 0.67 0.901258
Target:  5'- --gUGGUGCUCaaGCUgcccacgcucuucGGCACCGaCGUGg -3'
miRNA:   3'- gcaACCACGAG--UGA-------------UCGUGGUcGCAC- -5'
25353 3' -54.3 NC_005336.1 + 11879 0.67 0.895294
Target:  5'- uCGagGGUGCUCAUguugcccuGCGCCAGgGa- -3'
miRNA:   3'- -GCaaCCACGAGUGau------CGUGGUCgCac -5'
25353 3' -54.3 NC_005336.1 + 125151 0.67 0.895294
Target:  5'- aCG-UGGUGCUCGCgcgcAGCGCCuccaugcucuGCGa- -3'
miRNA:   3'- -GCaACCACGAGUGa---UCGUGGu---------CGCac -5'
25353 3' -54.3 NC_005336.1 + 13518 0.67 0.895294
Target:  5'- cCGgcGGcGUcaUCGCggccagcGGCACCGGCGUGg -3'
miRNA:   3'- -GCaaCCaCG--AGUGa------UCGUGGUCGCAC- -5'
25353 3' -54.3 NC_005336.1 + 85992 0.67 0.888438
Target:  5'- aGUUGaaGUGCuUCAUcAGCGCCAGCa-- -3'
miRNA:   3'- gCAAC--CACG-AGUGaUCGUGGUCGcac -5'
25353 3' -54.3 NC_005336.1 + 110173 0.67 0.888438
Target:  5'- gGUggUGGUGUUCuCcAGCACCAcgcccuGCGUGa -3'
miRNA:   3'- gCA--ACCACGAGuGaUCGUGGU------CGCAC- -5'
25353 3' -54.3 NC_005336.1 + 18196 0.67 0.881346
Target:  5'- gGUUGG-GUUUGCUGGCGCCAcaGUGc -3'
miRNA:   3'- gCAACCaCGAGUGAUCGUGGUcgCAC- -5'
25353 3' -54.3 NC_005336.1 + 26405 0.67 0.881346
Target:  5'- gCGUUGGUaaacGCUCccAgUAGCACUAGCa-- -3'
miRNA:   3'- -GCAACCA----CGAG--UgAUCGUGGUCGcac -5'
25353 3' -54.3 NC_005336.1 + 4029 0.68 0.874021
Target:  5'- ------cGCgcgCACUAGCACCGGCGa- -3'
miRNA:   3'- gcaaccaCGa--GUGAUCGUGGUCGCac -5'
25353 3' -54.3 NC_005336.1 + 19277 0.68 0.874021
Target:  5'- uCGUUGGUGCcgucgaugccUCAgUGGUugCGGaUGUGg -3'
miRNA:   3'- -GCAACCACG----------AGUgAUCGugGUC-GCAC- -5'
25353 3' -54.3 NC_005336.1 + 121331 0.68 0.874021
Target:  5'- aCGgaGGUGCUC----GCGCCGGCGg- -3'
miRNA:   3'- -GCaaCCACGAGugauCGUGGUCGCac -5'
25353 3' -54.3 NC_005336.1 + 61706 0.68 0.866469
Target:  5'- ---aGGUGCUCGa-GGCgcacggcaucACCAGCGUGc -3'
miRNA:   3'- gcaaCCACGAGUgaUCG----------UGGUCGCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.