miRNA display CGI


Results 1 - 20 of 252 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25353 5' -68 NC_005336.1 + 110556 0.66 0.399075
Target:  5'- gGCGCGCaCGGcgaagGCGagcagcGCGGCGGCgCa- -3'
miRNA:   3'- gCGCGCG-GCCa----CGU------CGCCGCCGgGgc -5'
25353 5' -68 NC_005336.1 + 40629 0.66 0.399075
Target:  5'- uCG-GCGCCGcugGCAGaguugaaGGCGGCgCCGc -3'
miRNA:   3'- -GCgCGCGGCca-CGUCg------CCGCCGgGGC- -5'
25353 5' -68 NC_005336.1 + 83032 0.66 0.399075
Target:  5'- gGCGCuGCCGGUGCAuGCGcaCGaaCCCGu -3'
miRNA:   3'- gCGCG-CGGCCACGU-CGCc-GCcgGGGC- -5'
25353 5' -68 NC_005336.1 + 22671 0.66 0.399075
Target:  5'- uCGUGCGCgCGGUcgugaGCAacuucaaccccGCGGUGGUCgCGg -3'
miRNA:   3'- -GCGCGCG-GCCA-----CGU-----------CGCCGCCGGgGC- -5'
25353 5' -68 NC_005336.1 + 82427 0.66 0.398286
Target:  5'- gCGCGCGCuugaugcgcaggCGGUGCAccgugauguccacGCGGUGcacggagggccGUCCCGa -3'
miRNA:   3'- -GCGCGCG------------GCCACGU-------------CGCCGC-----------CGGGGC- -5'
25353 5' -68 NC_005336.1 + 109060 0.66 0.395926
Target:  5'- aGCGCGCgGGUGagacgccgucguGCGaGCGGaaCCCGa -3'
miRNA:   3'- gCGCGCGgCCACgu----------CGC-CGCCg-GGGC- -5'
25353 5' -68 NC_005336.1 + 41144 0.66 0.391233
Target:  5'- cCGUGUGCgCGGaucGCGGaGGCGGaCUCCGc -3'
miRNA:   3'- -GCGCGCG-GCCa--CGUCgCCGCC-GGGGC- -5'
25353 5' -68 NC_005336.1 + 99508 0.66 0.391233
Target:  5'- gGCGCGCCGcUGgaUAGCGgaccGCGcGCCUCGa -3'
miRNA:   3'- gCGCGCGGCcAC--GUCGC----CGC-CGGGGC- -5'
25353 5' -68 NC_005336.1 + 38369 0.66 0.391233
Target:  5'- gGCGUGCuCGGcaacGCGGCGccGCuGGCgCCCGu -3'
miRNA:   3'- gCGCGCG-GCCa---CGUCGC--CG-CCG-GGGC- -5'
25353 5' -68 NC_005336.1 + 129281 0.66 0.391233
Target:  5'- cCGCGuUGacgaGGUGCGGCGGCugcuGGCCgCa -3'
miRNA:   3'- -GCGC-GCgg--CCACGUCGCCG----CCGGgGc -5'
25353 5' -68 NC_005336.1 + 67729 0.66 0.391233
Target:  5'- gCGCGCGCaucaUGCgcgAGCGGUGGCCgaacaCCGc -3'
miRNA:   3'- -GCGCGCGgcc-ACG---UCGCCGCCGG-----GGC- -5'
25353 5' -68 NC_005336.1 + 13114 0.66 0.391233
Target:  5'- aCGCGCGCgaCGGccUGCAGCca-GGCgCCGa -3'
miRNA:   3'- -GCGCGCG--GCC--ACGUCGccgCCGgGGC- -5'
25353 5' -68 NC_005336.1 + 123204 0.66 0.391233
Target:  5'- gCGCGCGCUGGacUGCGGguuCGcGCGcGCCgUGg -3'
miRNA:   3'- -GCGCGCGGCC--ACGUC---GC-CGC-CGGgGC- -5'
25353 5' -68 NC_005336.1 + 121829 0.66 0.391233
Target:  5'- -uCGCGCUGGgcUGCGagaccGCGGUcgGGCCCUGc -3'
miRNA:   3'- gcGCGCGGCC--ACGU-----CGCCG--CCGGGGC- -5'
25353 5' -68 NC_005336.1 + 114386 0.66 0.391233
Target:  5'- cCGCGgaGCUGGagaucgacGCGGCGGUGGCCg-- -3'
miRNA:   3'- -GCGCg-CGGCCa-------CGUCGCCGCCGGggc -5'
25353 5' -68 NC_005336.1 + 105519 0.66 0.390455
Target:  5'- gCGCGCGCCccagucgccgcgcGcGUGCgccGGgGGCaGGCuCCCGu -3'
miRNA:   3'- -GCGCGCGG-------------C-CACG---UCgCCG-CCG-GGGC- -5'
25353 5' -68 NC_005336.1 + 6241 0.66 0.390455
Target:  5'- cCGCGCGCaCGG-GCuccucgaAGCGGaaggucgcgcCGGCCgCGg -3'
miRNA:   3'- -GCGCGCG-GCCaCG-------UCGCC----------GCCGGgGC- -5'
25353 5' -68 NC_005336.1 + 129521 0.66 0.383493
Target:  5'- cCGUGCGCCGGcucgGCAcGCcGCuGCgCCGg -3'
miRNA:   3'- -GCGCGCGGCCa---CGU-CGcCGcCGgGGC- -5'
25353 5' -68 NC_005336.1 + 51481 0.66 0.383493
Target:  5'- uCGCGCcgcaGCUGGUGguGCuGGUggGGCgCCa -3'
miRNA:   3'- -GCGCG----CGGCCACguCG-CCG--CCGgGGc -5'
25353 5' -68 NC_005336.1 + 60451 0.66 0.383493
Target:  5'- cCGCGC-CCGGccuucaucgagaUGCcGCGGCGGCgCgUGg -3'
miRNA:   3'- -GCGCGcGGCC------------ACGuCGCCGCCG-GgGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.