miRNA display CGI


Results 1 - 20 of 252 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25353 5' -68 NC_005336.1 + 83941 0.74 0.115739
Target:  5'- gGCGCGCCGGUGCggggcacacugcuGGUGGCGGgCauguCGg -3'
miRNA:   3'- gCGCGCGGCCACG-------------UCGCCGCCgGg---GC- -5'
25353 5' -68 NC_005336.1 + 122055 0.76 0.082362
Target:  5'- uCGCGUGCCGGUacGCcgucucGGaCGGCGGCCUCa -3'
miRNA:   3'- -GCGCGCGGCCA--CG------UC-GCCGCCGGGGc -5'
25353 5' -68 NC_005336.1 + 9671 0.76 0.08442
Target:  5'- aGCGCcuGCgCGGccGCGGCGGCGGCCUCc -3'
miRNA:   3'- gCGCG--CG-GCCa-CGUCGCCGCCGGGGc -5'
25353 5' -68 NC_005336.1 + 58669 0.76 0.08442
Target:  5'- cCGCGUcauGCCugaGGgcaugGcCAGCGGCGGCCCCGc -3'
miRNA:   3'- -GCGCG---CGG---CCa----C-GUCGCCGCCGGGGC- -5'
25353 5' -68 NC_005336.1 + 35354 0.75 0.086527
Target:  5'- gGCGCGCCGcGgcgcGCGaUGGUGGCCCCGu -3'
miRNA:   3'- gCGCGCGGC-Ca---CGUcGCCGCCGGGGC- -5'
25353 5' -68 NC_005336.1 + 3875 0.75 0.097832
Target:  5'- uCGCGCGCCGa---GGCcGCGGCCCCGc -3'
miRNA:   3'- -GCGCGCGGCcacgUCGcCGCCGGGGC- -5'
25353 5' -68 NC_005336.1 + 99927 0.75 0.100255
Target:  5'- cCGCGCGCUGaUGCGGCGGCugcgugcggagGGCgCCGu -3'
miRNA:   3'- -GCGCGCGGCcACGUCGCCG-----------CCGgGGC- -5'
25353 5' -68 NC_005336.1 + 12635 0.74 0.105272
Target:  5'- uCGCGCGCCGcGUGCGcggccucugcGCGGCGcuGCgCCGg -3'
miRNA:   3'- -GCGCGCGGC-CACGU----------CGCCGC--CGgGGC- -5'
25353 5' -68 NC_005336.1 + 36295 0.74 0.105272
Target:  5'- uGCGCGcCCGGcgGCGGC-GCGGUUCCGg -3'
miRNA:   3'- gCGCGC-GGCCa-CGUCGcCGCCGGGGC- -5'
25353 5' -68 NC_005336.1 + 10264 0.76 0.080352
Target:  5'- aGCGUcuGCCGGcGCAGCGGCGuGCCgagCCGg -3'
miRNA:   3'- gCGCG--CGGCCaCGUCGCCGC-CGG---GGC- -5'
25353 5' -68 NC_005336.1 + 94958 0.76 0.078389
Target:  5'- gGCGCGCCGGcgGCGacuGCGGCGaGCugCCCGg -3'
miRNA:   3'- gCGCGCGGCCa-CGU---CGCCGC-CG--GGGC- -5'
25353 5' -68 NC_005336.1 + 133341 0.76 0.076472
Target:  5'- cCGCGgacucgaucuCGCCGGagGCGGCGGCGGCgCUGg -3'
miRNA:   3'- -GCGC----------GCGGCCa-CGUCGCCGCCGgGGC- -5'
25353 5' -68 NC_005336.1 + 135990 0.81 0.035137
Target:  5'- gGCGCGCgCGG-GCAGCGGCuGGCCgCGg -3'
miRNA:   3'- gCGCGCG-GCCaCGUCGCCG-CCGGgGC- -5'
25353 5' -68 NC_005336.1 + 134019 0.8 0.038879
Target:  5'- uGCGCGUgGGUGCGGUGcGCGGCCgCCu -3'
miRNA:   3'- gCGCGCGgCCACGUCGC-CGCCGG-GGc -5'
25353 5' -68 NC_005336.1 + 123761 0.79 0.048783
Target:  5'- uCGC-CGCCGGcUGCGacGCGGCGGCCgCCGa -3'
miRNA:   3'- -GCGcGCGGCC-ACGU--CGCCGCCGG-GGC- -5'
25353 5' -68 NC_005336.1 + 50967 0.78 0.052602
Target:  5'- gCGUGCGCCGGcGCGGCGGCcGGCgcaucaccaacCCCGu -3'
miRNA:   3'- -GCGCGCGGCCaCGUCGCCG-CCG-----------GGGC- -5'
25353 5' -68 NC_005336.1 + 19755 0.77 0.064258
Target:  5'- aCGCGCGCuCGGUGCcGCccgcggcgacGGCGGCgCCGa -3'
miRNA:   3'- -GCGCGCG-GCCACGuCG----------CCGCCGgGGC- -5'
25353 5' -68 NC_005336.1 + 29021 0.77 0.064258
Target:  5'- cCGCaGC-CCGGcgGCAGCGGCGGCUUCGa -3'
miRNA:   3'- -GCG-CGcGGCCa-CGUCGCCGCCGGGGC- -5'
25353 5' -68 NC_005336.1 + 7109 0.77 0.06654
Target:  5'- cCGCGCGaagugcacgcagaGGUGCAGCGGCGuGCgCCCGu -3'
miRNA:   3'- -GCGCGCgg-----------CCACGUCGCCGC-CG-GGGC- -5'
25353 5' -68 NC_005336.1 + 135949 0.76 0.076472
Target:  5'- aCGCGCGCgGGcGCucGGCGGCGGCgCUGc -3'
miRNA:   3'- -GCGCGCGgCCaCG--UCGCCGCCGgGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.