miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25360 3' -56 NC_005336.1 + 19971 0.66 0.913852
Target:  5'- gUCGGccGCGGCaacGACCuuuccggauaUCGUGAUGGUGc -3'
miRNA:   3'- -AGCUcaUGCCG---CUGG----------AGCACUGCCAU- -5'
25360 3' -56 NC_005336.1 + 76953 0.66 0.913852
Target:  5'- gCGcGcGCGGCGAguCUUCGUGgcGCGGUGg -3'
miRNA:   3'- aGCuCaUGCCGCU--GGAGCAC--UGCCAU- -5'
25360 3' -56 NC_005336.1 + 75088 0.66 0.907866
Target:  5'- gCGuGaGCGGCGggcGCCUCGUGuacgUGGUGg -3'
miRNA:   3'- aGCuCaUGCCGC---UGGAGCACu---GCCAU- -5'
25360 3' -56 NC_005336.1 + 129829 0.66 0.901645
Target:  5'- gCGGcGUGCGGuCGACCaCGcUGGCGGc- -3'
miRNA:   3'- aGCU-CAUGCC-GCUGGaGC-ACUGCCau -5'
25360 3' -56 NC_005336.1 + 45616 0.66 0.901645
Target:  5'- cCGaAGU-CGGCGGCCgCGggGGCGGg- -3'
miRNA:   3'- aGC-UCAuGCCGCUGGaGCa-CUGCCau -5'
25360 3' -56 NC_005336.1 + 119668 0.66 0.88851
Target:  5'- -gGAGUGCGGCcgcgguguccAUCUCGcUGACGGg- -3'
miRNA:   3'- agCUCAUGCCGc---------UGGAGC-ACUGCCau -5'
25360 3' -56 NC_005336.1 + 30512 0.66 0.881602
Target:  5'- gCGGGcuccACGGCGACCUgcCGaUGuCGGUGu -3'
miRNA:   3'- aGCUCa---UGCCGCUGGA--GC-ACuGCCAU- -5'
25360 3' -56 NC_005336.1 + 53563 0.67 0.873749
Target:  5'- gCGAGUAC-GCGACCgaggucUCGUugaagaccuggaaGACGGUGc -3'
miRNA:   3'- aGCUCAUGcCGCUGG------AGCA-------------CUGCCAU- -5'
25360 3' -56 NC_005336.1 + 22731 0.67 0.867129
Target:  5'- -gGAGcaugGCGGCGACCaCGUccucGCGGUAg -3'
miRNA:   3'- agCUCa---UGCCGCUGGaGCAc---UGCCAU- -5'
25360 3' -56 NC_005336.1 + 16330 0.67 0.859573
Target:  5'- aUCGAGcgcACGGCGcCCUcCGcGGCGGg- -3'
miRNA:   3'- -AGCUCa--UGCCGCuGGA-GCaCUGCCau -5'
25360 3' -56 NC_005336.1 + 48486 0.67 0.851813
Target:  5'- cUCGAGcucguUGCGGauGCgCUCGcUGACGGUGg -3'
miRNA:   3'- -AGCUC-----AUGCCgcUG-GAGC-ACUGCCAU- -5'
25360 3' -56 NC_005336.1 + 41499 0.67 0.851813
Target:  5'- cUCGGcgGCGGCGACCUCuacaacGGCGGc- -3'
miRNA:   3'- -AGCUcaUGCCGCUGGAGca----CUGCCau -5'
25360 3' -56 NC_005336.1 + 65766 0.67 0.843854
Target:  5'- gUGAGcACGGCGGCUUCGUccACGGc- -3'
miRNA:   3'- aGCUCaUGCCGCUGGAGCAc-UGCCau -5'
25360 3' -56 NC_005336.1 + 72302 0.68 0.827368
Target:  5'- aCGAGcACGGCGugCgCGUGAUccgcgaGGUGc -3'
miRNA:   3'- aGCUCaUGCCGCugGaGCACUG------CCAU- -5'
25360 3' -56 NC_005336.1 + 53945 0.68 0.827368
Target:  5'- cUUGGugGCGGCGGCCUCGcUGGCcGUGc -3'
miRNA:   3'- -AGCUcaUGCCGCUGGAGC-ACUGcCAU- -5'
25360 3' -56 NC_005336.1 + 123063 0.68 0.818855
Target:  5'- aCGGGUuucugGCGGCGGCCgcagaCGUGACcGUc -3'
miRNA:   3'- aGCUCA-----UGCCGCUGGa----GCACUGcCAu -5'
25360 3' -56 NC_005336.1 + 72350 0.68 0.818855
Target:  5'- gCGuGaGCGGCGugUUCGUGAuCGGc- -3'
miRNA:   3'- aGCuCaUGCCGCugGAGCACU-GCCau -5'
25360 3' -56 NC_005336.1 + 13488 0.68 0.801331
Target:  5'- aCGAGgcCGGCaaGACgggCGUGACGGUc -3'
miRNA:   3'- aGCUCauGCCG--CUGga-GCACUGCCAu -5'
25360 3' -56 NC_005336.1 + 102727 0.68 0.792336
Target:  5'- aCGAGcGCGGUGGCCagGUGcGCGGc- -3'
miRNA:   3'- aGCUCaUGCCGCUGGagCAC-UGCCau -5'
25360 3' -56 NC_005336.1 + 121272 0.69 0.783197
Target:  5'- cCGAGcuguCGGgGAUCUCGcggUGGCGGUGc -3'
miRNA:   3'- aGCUCau--GCCgCUGGAGC---ACUGCCAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.