miRNA display CGI


Results 1 - 20 of 517 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25360 5' -54.4 NC_005336.1 + 136750 0.65 0.953392
Target:  5'- cCGCGCGGccGC-CGuGGCCgaguuguAGCCGCcgACCa -3'
miRNA:   3'- -GCGUGUU--UGaGCuCUGG-------UCGGCG--UGG- -5'
25360 5' -54.4 NC_005336.1 + 3213 0.65 0.953392
Target:  5'- cCGCGCGGccGC-CGuGGCCgaguuguAGCCGCcgACCa -3'
miRNA:   3'- -GCGUGUU--UGaGCuCUGG-------UCGGCG--UGG- -5'
25360 5' -54.4 NC_005336.1 + 29005 0.65 0.953392
Target:  5'- uGCGCAGaACUCGcacccgcAGcCCGGCgGCAgCg -3'
miRNA:   3'- gCGUGUU-UGAGC-------UCuGGUCGgCGUgG- -5'
25360 5' -54.4 NC_005336.1 + 47580 0.65 0.953392
Target:  5'- cCGguCGAACgucgcguUCGAGGgC-GCCGCGCUg -3'
miRNA:   3'- -GCguGUUUG-------AGCUCUgGuCGGCGUGG- -5'
25360 5' -54.4 NC_005336.1 + 54240 0.65 0.953392
Target:  5'- aGC-CAGGCcguggUCGAcACCGGCCGCgacacgcGCCu -3'
miRNA:   3'- gCGuGUUUG-----AGCUcUGGUCGGCG-------UGG- -5'
25360 5' -54.4 NC_005336.1 + 80155 0.65 0.953392
Target:  5'- gCGCACGcGgUCGGGGuccgcguacaucuCCAGCgGCAgCa -3'
miRNA:   3'- -GCGUGUuUgAGCUCU-------------GGUCGgCGUgG- -5'
25360 5' -54.4 NC_005336.1 + 62168 0.66 0.949678
Target:  5'- aGCGCAGguugagcuuGCgccgCGAGACCGggauGCCGauguGCCg -3'
miRNA:   3'- gCGUGUU---------UGa---GCUCUGGU----CGGCg---UGG- -5'
25360 5' -54.4 NC_005336.1 + 41062 0.66 0.949678
Target:  5'- aGCGCGuuguccagCGAGGCguGCacgCGCGCCa -3'
miRNA:   3'- gCGUGUuuga----GCUCUGguCG---GCGUGG- -5'
25360 5' -54.4 NC_005336.1 + 50704 0.66 0.949678
Target:  5'- uCGCAgGGGCgCGAGugCGcuucCCGCGCUc -3'
miRNA:   3'- -GCGUgUUUGaGCUCugGUc---GGCGUGG- -5'
25360 5' -54.4 NC_005336.1 + 101346 0.66 0.949678
Target:  5'- gCGgACAAGCucuUCGGGACCua-CGCgACCa -3'
miRNA:   3'- -GCgUGUUUG---AGCUCUGGucgGCG-UGG- -5'
25360 5' -54.4 NC_005336.1 + 97706 0.66 0.949678
Target:  5'- aGCGCAGcCUCGAggGACC-GCagaacaaGUACCa -3'
miRNA:   3'- gCGUGUUuGAGCU--CUGGuCGg------CGUGG- -5'
25360 5' -54.4 NC_005336.1 + 133520 0.66 0.949678
Target:  5'- aCGCGCGcGCUCagcguGACCgcGGCCgGCGCg -3'
miRNA:   3'- -GCGUGUuUGAGcu---CUGG--UCGG-CGUGg -5'
25360 5' -54.4 NC_005336.1 + 91051 0.66 0.949678
Target:  5'- aGCACAcgcggaggGGCUCcuuGCCGGCCGCGa- -3'
miRNA:   3'- gCGUGU--------UUGAGcucUGGUCGGCGUgg -5'
25360 5' -54.4 NC_005336.1 + 70842 0.66 0.949678
Target:  5'- gCGCAUGGcCUcCGAGuCC-GCCGCgGCCg -3'
miRNA:   3'- -GCGUGUUuGA-GCUCuGGuCGGCG-UGG- -5'
25360 5' -54.4 NC_005336.1 + 65723 0.66 0.949678
Target:  5'- uGCAgAAGCagGAGAUCc-CCGCGCUa -3'
miRNA:   3'- gCGUgUUUGagCUCUGGucGGCGUGG- -5'
25360 5' -54.4 NC_005336.1 + 124719 0.66 0.949678
Target:  5'- uGCGCGAACgcgcaCGuGGaCAGCCGCAa- -3'
miRNA:   3'- gCGUGUUUGa----GCuCUgGUCGGCGUgg -5'
25360 5' -54.4 NC_005336.1 + 9201 0.66 0.949678
Target:  5'- gCGCGCAGACcacgCG-GAUCucguaccccuugAGCCGCAgCg -3'
miRNA:   3'- -GCGUGUUUGa---GCuCUGG------------UCGGCGUgG- -5'
25360 5' -54.4 NC_005336.1 + 10706 0.66 0.949678
Target:  5'- aCGCACGcAC-CGAcgcGCUAGCCcCGCCg -3'
miRNA:   3'- -GCGUGUuUGaGCUc--UGGUCGGcGUGG- -5'
25360 5' -54.4 NC_005336.1 + 36157 0.66 0.949678
Target:  5'- aCGCGCAca---GAGACCGaCCGCAUg -3'
miRNA:   3'- -GCGUGUuugagCUCUGGUcGGCGUGg -5'
25360 5' -54.4 NC_005336.1 + 17381 0.66 0.949678
Target:  5'- uCGUACGcgguGCUgccgccgccCGAGGa-GGCCGCGCCg -3'
miRNA:   3'- -GCGUGUu---UGA---------GCUCUggUCGGCGUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.