miRNA display CGI


Results 1 - 20 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25364 3' -60.7 NC_005336.1 + 98656 0.66 0.742218
Target:  5'- cCGcCUC-CGCGAUCCGcgcACACGGCa-- -3'
miRNA:   3'- -GC-GAGcGCGCUGGGCa--UGUGCCGccu -5'
25364 3' -60.7 NC_005336.1 + 6856 0.66 0.742218
Target:  5'- aGC-CGCGCGACCUcgagcucgGUGC-CGuCGGAg -3'
miRNA:   3'- gCGaGCGCGCUGGG--------CAUGuGCcGCCU- -5'
25364 3' -60.7 NC_005336.1 + 63661 0.66 0.742218
Target:  5'- gCGCUCGCGaaccccgagGACCuCGUggACAagcuCGGCGGc -3'
miRNA:   3'- -GCGAGCGCg--------CUGG-GCA--UGU----GCCGCCu -5'
25364 3' -60.7 NC_005336.1 + 101199 0.66 0.742218
Target:  5'- aGCgugaCGCGCGGCagCGagaGCACGaGCGGGc -3'
miRNA:   3'- gCGa---GCGCGCUGg-GCa--UGUGC-CGCCU- -5'
25364 3' -60.7 NC_005336.1 + 91595 0.66 0.742218
Target:  5'- aGCguuuccaCGCGCGGCUCGaagGCGCGcGCGaGGu -3'
miRNA:   3'- gCGa------GCGCGCUGGGCa--UGUGC-CGC-CU- -5'
25364 3' -60.7 NC_005336.1 + 37227 0.66 0.741282
Target:  5'- gCGCUCuccacgaGCGCGgugGCCagGUGCGCGGCcucGGGc -3'
miRNA:   3'- -GCGAG-------CGCGC---UGGg-CAUGUGCCG---CCU- -5'
25364 3' -60.7 NC_005336.1 + 136499 0.66 0.739408
Target:  5'- uGCUgcaCGuCGCGACCgugaccguguacgaCGUGCGCGGCcugcgGGAc -3'
miRNA:   3'- gCGA---GC-GCGCUGG--------------GCAUGUGCCG-----CCU- -5'
25364 3' -60.7 NC_005336.1 + 136499 0.66 0.739408
Target:  5'- uGCUgcaCGuCGCGACCgugaccguguacgaCGUGCGCGGCcugcgGGAc -3'
miRNA:   3'- gCGA---GC-GCGCUGG--------------GCAUGUGCCG-----CCU- -5'
25364 3' -60.7 NC_005336.1 + 59520 0.66 0.732821
Target:  5'- aCGCUCGacgGCGGCgCCGUGgGCGaguucugcucGCGGc -3'
miRNA:   3'- -GCGAGCg--CGCUG-GGCAUgUGC----------CGCCu -5'
25364 3' -60.7 NC_005336.1 + 99508 0.66 0.732821
Target:  5'- --aUCGCGCGGCC---GCGCGGCGc- -3'
miRNA:   3'- gcgAGCGCGCUGGgcaUGUGCCGCcu -5'
25364 3' -60.7 NC_005336.1 + 135913 0.66 0.732821
Target:  5'- uGCUgGCGCGGCgCGgggcCGCGGCc-- -3'
miRNA:   3'- gCGAgCGCGCUGgGCau--GUGCCGccu -5'
25364 3' -60.7 NC_005336.1 + 114352 0.66 0.732821
Target:  5'- cCGCUgcUGCGCGACgaggccuucgCCGgcCGCGccGCGGAg -3'
miRNA:   3'- -GCGA--GCGCGCUG----------GGCauGUGC--CGCCU- -5'
25364 3' -60.7 NC_005336.1 + 89364 0.66 0.732821
Target:  5'- gCGC-CGaaCGCGGgCCGUACGCGGgaCGGc -3'
miRNA:   3'- -GCGaGC--GCGCUgGGCAUGUGCC--GCCu -5'
25364 3' -60.7 NC_005336.1 + 29180 0.66 0.732821
Target:  5'- uGCUCGCGCccuccgaGCUCGUcguCGCGcucGCGGAg -3'
miRNA:   3'- gCGAGCGCGc------UGGGCAu--GUGC---CGCCU- -5'
25364 3' -60.7 NC_005336.1 + 124174 0.66 0.732821
Target:  5'- aCGCUcucggCGCGCGugCgGUcgcgACAC-GCGGAc -3'
miRNA:   3'- -GCGA-----GCGCGCugGgCA----UGUGcCGCCU- -5'
25364 3' -60.7 NC_005336.1 + 28248 0.66 0.732821
Target:  5'- aCGCggcCGCGCGGCgUGcggugGCGCGGCa-- -3'
miRNA:   3'- -GCGa--GCGCGCUGgGCa----UGUGCCGccu -5'
25364 3' -60.7 NC_005336.1 + 52870 0.66 0.729986
Target:  5'- cCGCagCGCGCuGaACCCGUACAUcucaacuucgggaaGGUGGu -3'
miRNA:   3'- -GCGa-GCGCG-C-UGGGCAUGUG--------------CCGCCu -5'
25364 3' -60.7 NC_005336.1 + 115897 0.66 0.723344
Target:  5'- cCGCggccgCGCGCGcCCCGacgACGCcGCaGGAa -3'
miRNA:   3'- -GCGa----GCGCGCuGGGCa--UGUGcCG-CCU- -5'
25364 3' -60.7 NC_005336.1 + 8687 0.66 0.723344
Target:  5'- gGCcccgUCGCGCGGCCUccGCAgcggcaugcagcCGGCGGu -3'
miRNA:   3'- gCG----AGCGCGCUGGGcaUGU------------GCCGCCu -5'
25364 3' -60.7 NC_005336.1 + 127157 0.66 0.723344
Target:  5'- gCGC-CGCGCagaGGCCgCGcACGCGGCGc- -3'
miRNA:   3'- -GCGaGCGCG---CUGG-GCaUGUGCCGCcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.