miRNA display CGI


Results 21 - 40 of 260 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25364 3' -60.7 NC_005336.1 + 16531 0.66 0.723344
Target:  5'- aGCUCGCGU-ACagGUGCACgGGCGuGAg -3'
miRNA:   3'- gCGAGCGCGcUGggCAUGUG-CCGC-CU- -5'
25364 3' -60.7 NC_005336.1 + 127157 0.66 0.723344
Target:  5'- gCGC-CGCGCagaGGCCgCGcACGCGGCGc- -3'
miRNA:   3'- -GCGaGCGCG---CUGG-GCaUGUGCCGCcu -5'
25364 3' -60.7 NC_005336.1 + 91463 0.66 0.723344
Target:  5'- gCGCUCGCGCucuGCUCGaGCuCGuuGCGGAu -3'
miRNA:   3'- -GCGAGCGCGc--UGGGCaUGuGC--CGCCU- -5'
25364 3' -60.7 NC_005336.1 + 86619 0.66 0.722392
Target:  5'- uGCUgGCGCaGCCCGaGCgugauggAgGGCGGGa -3'
miRNA:   3'- gCGAgCGCGcUGGGCaUG-------UgCCGCCU- -5'
25364 3' -60.7 NC_005336.1 + 100992 0.66 0.720486
Target:  5'- uGCUCGUGgaucucgucuacuaCGACCguguCGUA-GCGGCGGAu -3'
miRNA:   3'- gCGAGCGC--------------GCUGG----GCAUgUGCCGCCU- -5'
25364 3' -60.7 NC_005336.1 + 128113 0.66 0.713794
Target:  5'- aGgaCGCGgaCGAgCUGcGCGCGGCGGGc -3'
miRNA:   3'- gCgaGCGC--GCUgGGCaUGUGCCGCCU- -5'
25364 3' -60.7 NC_005336.1 + 97601 0.66 0.713794
Target:  5'- cCGC-CGCGCGAacuCCgCGUGaauCGcGCGGAa -3'
miRNA:   3'- -GCGaGCGCGCU---GG-GCAUgu-GC-CGCCU- -5'
25364 3' -60.7 NC_005336.1 + 12332 0.66 0.713794
Target:  5'- aGUggCGUGCG-CCCGUACGCGuccGUGGc -3'
miRNA:   3'- gCGa-GCGCGCuGGGCAUGUGC---CGCCu -5'
25364 3' -60.7 NC_005336.1 + 122533 0.66 0.713794
Target:  5'- gCGCgUgGaCGCGACCCGcGCGCGcGCGc- -3'
miRNA:   3'- -GCG-AgC-GCGCUGGGCaUGUGC-CGCcu -5'
25364 3' -60.7 NC_005336.1 + 128094 0.66 0.713794
Target:  5'- aCGCggcCGCGAUCCGcgccUGCGaGGCGGAg -3'
miRNA:   3'- -GCGagcGCGCUGGGC----AUGUgCCGCCU- -5'
25364 3' -60.7 NC_005336.1 + 58366 0.66 0.713794
Target:  5'- cCGCUUGUGC-AUCaCGUACcccaugGCGGCGGc -3'
miRNA:   3'- -GCGAGCGCGcUGG-GCAUG------UGCCGCCu -5'
25364 3' -60.7 NC_005336.1 + 84007 0.66 0.713794
Target:  5'- gCGCcggCGCGgGGCaCGU-CACGGCaGGAg -3'
miRNA:   3'- -GCGa--GCGCgCUGgGCAuGUGCCG-CCU- -5'
25364 3' -60.7 NC_005336.1 + 89089 0.66 0.713794
Target:  5'- uCGgUCGUcgGCGACCUugccGCGCGcGCGGAg -3'
miRNA:   3'- -GCgAGCG--CGCUGGGca--UGUGC-CGCCU- -5'
25364 3' -60.7 NC_005336.1 + 13477 0.66 0.713794
Target:  5'- uGCUCGgGCGAgCgCCGacuccacgGCACcGCGGAg -3'
miRNA:   3'- gCGAGCgCGCU-G-GGCa-------UGUGcCGCCU- -5'
25364 3' -60.7 NC_005336.1 + 50395 0.66 0.713794
Target:  5'- uGcCUCGuCGCccGCCgGcUGCGCGGCGGGc -3'
miRNA:   3'- gC-GAGC-GCGc-UGGgC-AUGUGCCGCCU- -5'
25364 3' -60.7 NC_005336.1 + 127069 0.66 0.712835
Target:  5'- uGCUCauGCGCGGcaacccgcuagacCCCG-ACGCGGUGcGAc -3'
miRNA:   3'- gCGAG--CGCGCU-------------GGGCaUGUGCCGC-CU- -5'
25364 3' -60.7 NC_005336.1 + 3472 0.66 0.710916
Target:  5'- cCGUUCGCGCGgacgggGCCCGccuccGCgaaggcggccggcaGCGGCGGc -3'
miRNA:   3'- -GCGAGCGCGC------UGGGCa----UG--------------UGCCGCCu -5'
25364 3' -60.7 NC_005336.1 + 3472 0.66 0.710916
Target:  5'- cCGUUCGCGCGgacgggGCCCGccuccGCgaaggcggccggcaGCGGCGGc -3'
miRNA:   3'- -GCGAGCGCGC------UGGGCa----UG--------------UGCCGCCu -5'
25364 3' -60.7 NC_005336.1 + 88182 0.66 0.708032
Target:  5'- gGCUCGCcugcagguacGCGuccagcggcgaaggcGCUCGcggcGCGCGGCGGAa -3'
miRNA:   3'- gCGAGCG----------CGC---------------UGGGCa---UGUGCCGCCU- -5'
25364 3' -60.7 NC_005336.1 + 109050 0.66 0.708032
Target:  5'- aCGCUCGCGaagcgcgcgggugaGACgCCGUcguGCGaGCGGAa -3'
miRNA:   3'- -GCGAGCGCg-------------CUG-GGCAug-UGC-CGCCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.