miRNA display CGI


Results 1 - 20 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25364 3' -60.7 NC_005336.1 + 3353 0.7 0.482168
Target:  5'- aGCUCGCGUGcauGCCCucgcccugcggGUACGcCGGCGaGAg -3'
miRNA:   3'- gCGAGCGCGC---UGGG-----------CAUGU-GCCGC-CU- -5'
25364 3' -60.7 NC_005336.1 + 3353 0.7 0.482168
Target:  5'- aGCUCGCGUGcauGCCCucgcccugcggGUACGcCGGCGaGAg -3'
miRNA:   3'- gCGAGCGCGC---UGGG-----------CAUGU-GCCGC-CU- -5'
25364 3' -60.7 NC_005336.1 + 3472 0.66 0.710916
Target:  5'- cCGUUCGCGCGgacgggGCCCGccuccGCgaaggcggccggcaGCGGCGGc -3'
miRNA:   3'- -GCGAGCGCGC------UGGGCa----UG--------------UGCCGCCu -5'
25364 3' -60.7 NC_005336.1 + 3472 0.66 0.710916
Target:  5'- cCGUUCGCGCGgacgggGCCCGccuccGCgaaggcggccggcaGCGGCGGc -3'
miRNA:   3'- -GCGAGCGCGC------UGGGCa----UG--------------UGCCGCCu -5'
25364 3' -60.7 NC_005336.1 + 3706 0.72 0.387535
Target:  5'- -cUUUGCGCGgccgggagaggcGCCCGggGCGCGGCGGGc -3'
miRNA:   3'- gcGAGCGCGC------------UGGGCa-UGUGCCGCCU- -5'
25364 3' -60.7 NC_005336.1 + 3706 0.72 0.387535
Target:  5'- -cUUUGCGCGgccgggagaggcGCCCGggGCGCGGCGGGc -3'
miRNA:   3'- gcGAGCGCGC------------UGGGCa-UGUGCCGCCU- -5'
25364 3' -60.7 NC_005336.1 + 3780 0.7 0.50989
Target:  5'- cCGC-CGCGCGGCCCGcggccgccaGCGCcGCGGc -3'
miRNA:   3'- -GCGaGCGCGCUGGGCa--------UGUGcCGCCu -5'
25364 3' -60.7 NC_005336.1 + 3780 0.7 0.50989
Target:  5'- cCGC-CGCGCGGCCCGcggccgccaGCGCcGCGGc -3'
miRNA:   3'- -GCGaGCGCGCUGGGCa--------UGUGcCGCCu -5'
25364 3' -60.7 NC_005336.1 + 5575 0.68 0.576869
Target:  5'- gCGCgagCGCGCucucGCCCGcACA-GGCGGGg -3'
miRNA:   3'- -GCGa--GCGCGc---UGGGCaUGUgCCGCCU- -5'
25364 3' -60.7 NC_005336.1 + 5643 0.76 0.211798
Target:  5'- aGCUCGCGCGcgacggcgaGCCUGUcCGCGGcCGGGa -3'
miRNA:   3'- gCGAGCGCGC---------UGGGCAuGUGCC-GCCU- -5'
25364 3' -60.7 NC_005336.1 + 6032 0.68 0.596415
Target:  5'- uGCUCGCGaucuCCUGcucGCACGcGCGGAc -3'
miRNA:   3'- gCGAGCGCgcu-GGGCa--UGUGC-CGCCU- -5'
25364 3' -60.7 NC_005336.1 + 6628 0.71 0.429057
Target:  5'- gCGCcCGCGCGcaGCaucaCGUccacgaGCGCGGCGGAg -3'
miRNA:   3'- -GCGaGCGCGC--UGg---GCA------UGUGCCGCCU- -5'
25364 3' -60.7 NC_005336.1 + 6856 0.66 0.742218
Target:  5'- aGC-CGCGCGACCUcgagcucgGUGC-CGuCGGAg -3'
miRNA:   3'- gCGaGCGCGCUGGG--------CAUGuGCcGCCU- -5'
25364 3' -60.7 NC_005336.1 + 7134 0.7 0.482168
Target:  5'- aGCggCGUGCG-CCCGUACuCGccGCGGAa -3'
miRNA:   3'- gCGa-GCGCGCuGGGCAUGuGC--CGCCU- -5'
25364 3' -60.7 NC_005336.1 + 7212 0.73 0.331134
Target:  5'- aGCUCGCGCGACaguCCGgccacucgcggucGCACGGCGu- -3'
miRNA:   3'- gCGAGCGCGCUG---GGCa------------UGUGCCGCcu -5'
25364 3' -60.7 NC_005336.1 + 8274 0.66 0.694509
Target:  5'- aGCUCGCGCaugacGCUCGcGCGCGGgcgcgUGGAc -3'
miRNA:   3'- gCGAGCGCGc----UGGGCaUGUGCC-----GCCU- -5'
25364 3' -60.7 NC_005336.1 + 8687 0.66 0.723344
Target:  5'- gGCcccgUCGCGCGGCCUccGCAgcggcaugcagcCGGCGGu -3'
miRNA:   3'- gCG----AGCGCGCUGGGcaUGU------------GCCGCCu -5'
25364 3' -60.7 NC_005336.1 + 9284 0.7 0.508021
Target:  5'- cCGCcgCGCGCGGCgCGagagcaggcucCGCGGCGGGc -3'
miRNA:   3'- -GCGa-GCGCGCUGgGCau---------GUGCCGCCU- -5'
25364 3' -60.7 NC_005336.1 + 9631 0.69 0.538258
Target:  5'- gCGCgcgaGCGCGGCCUGgUGCGCGaGCGc- -3'
miRNA:   3'- -GCGag--CGCGCUGGGC-AUGUGC-CGCcu -5'
25364 3' -60.7 NC_005336.1 + 9672 0.68 0.586626
Target:  5'- gCGCcUGCGCGGCCgCG---GCGGCGGc -3'
miRNA:   3'- -GCGaGCGCGCUGG-GCaugUGCCGCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.