miRNA display CGI


Results 1 - 20 of 260 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25364 3' -60.7 NC_005336.1 + 135959 0.71 0.403826
Target:  5'- gCGCUCgGCgGCGGCgCUGcugcGCGCGGCGGGc -3'
miRNA:   3'- -GCGAG-CG-CGCUG-GGCa---UGUGCCGCCU- -5'
25364 3' -60.7 NC_005336.1 + 68632 0.73 0.341327
Target:  5'- gCGCcCGCGCuGCCCGU-CGCGGCGc- -3'
miRNA:   3'- -GCGaGCGCGcUGGGCAuGUGCCGCcu -5'
25364 3' -60.7 NC_005336.1 + 65906 0.72 0.363923
Target:  5'- gGC-CGUGCGGCCCGUGgGCGaGCGc- -3'
miRNA:   3'- gCGaGCGCGCUGGGCAUgUGC-CGCcu -5'
25364 3' -60.7 NC_005336.1 + 68827 0.72 0.363923
Target:  5'- uGCgugUGCGgcauCGACCCGUacccGCGCGGCGGc -3'
miRNA:   3'- gCGa--GCGC----GCUGGGCA----UGUGCCGCCu -5'
25364 3' -60.7 NC_005336.1 + 61862 0.72 0.379553
Target:  5'- gGCUCGCGCacGACCgCGcgGCGCgcgaggccgGGCGGAa -3'
miRNA:   3'- gCGAGCGCG--CUGG-GCa-UGUG---------CCGCCU- -5'
25364 3' -60.7 NC_005336.1 + 3706 0.72 0.387535
Target:  5'- -cUUUGCGCGgccgggagaggcGCCCGggGCGCGGCGGGc -3'
miRNA:   3'- gcGAGCGCGC------------UGGGCa-UGUGCCGCCU- -5'
25364 3' -60.7 NC_005336.1 + 123324 0.72 0.395626
Target:  5'- gGCUCaucgaGCGCGGCgCGUGCguggGCGGCGaGAa -3'
miRNA:   3'- gCGAG-----CGCGCUGgGCAUG----UGCCGC-CU- -5'
25364 3' -60.7 NC_005336.1 + 99367 0.72 0.395626
Target:  5'- gCGCgUCGCGCGcacgcuGCgUGUGCGCGuGCGGGc -3'
miRNA:   3'- -GCG-AGCGCGC------UGgGCAUGUGC-CGCCU- -5'
25364 3' -60.7 NC_005336.1 + 19759 0.71 0.403826
Target:  5'- gCGCUCgGUGCcGCCCGcgGCgACGGCGGc -3'
miRNA:   3'- -GCGAG-CGCGcUGGGCa-UG-UGCCGCCu -5'
25364 3' -60.7 NC_005336.1 + 44495 0.73 0.326835
Target:  5'- uGCUCGacgugcggcCGCGACCUGUcGCACGaGCGGu -3'
miRNA:   3'- gCGAGC---------GCGCUGGGCA-UGUGC-CGCCu -5'
25364 3' -60.7 NC_005336.1 + 136012 0.73 0.312804
Target:  5'- cCGCggCGCugGCGGCCgCGggccGCGCGGCGGGg -3'
miRNA:   3'- -GCGa-GCG--CGCUGG-GCa---UGUGCCGCCU- -5'
25364 3' -60.7 NC_005336.1 + 21561 0.73 0.312804
Target:  5'- cCGCUCuuCGCGgacggcgaGCCCGUGCGCGacGCGGAg -3'
miRNA:   3'- -GCGAGc-GCGC--------UGGGCAUGUGC--CGCCU- -5'
25364 3' -60.7 NC_005336.1 + 111046 0.77 0.201959
Target:  5'- uGCUgGCGCG-CCCGUugACGG-GGAu -3'
miRNA:   3'- gCGAgCGCGCuGGGCAugUGCCgCCU- -5'
25364 3' -60.7 NC_005336.1 + 92464 0.76 0.222047
Target:  5'- uGCUCGCGCG-CaCCGUGCAgcacuCGGaCGGAg -3'
miRNA:   3'- gCGAGCGCGCuG-GGCAUGU-----GCC-GCCU- -5'
25364 3' -60.7 NC_005336.1 + 49533 0.75 0.249521
Target:  5'- gGCUcCGCGCG-CCgGUGCAgCGGCGGc -3'
miRNA:   3'- gCGA-GCGCGCuGGgCAUGU-GCCGCCu -5'
25364 3' -60.7 NC_005336.1 + 15009 0.75 0.267317
Target:  5'- gGCUCGCGCGGCgCGcGgGCGGCGu- -3'
miRNA:   3'- gCGAGCGCGCUGgGCaUgUGCCGCcu -5'
25364 3' -60.7 NC_005336.1 + 122051 0.74 0.273474
Target:  5'- gCGCUCGCGUG-CCgGUACgccgucucggACGGCGGc -3'
miRNA:   3'- -GCGAGCGCGCuGGgCAUG----------UGCCGCCu -5'
25364 3' -60.7 NC_005336.1 + 12642 0.74 0.286126
Target:  5'- cCGCgUGCGCGGCCUcUGCGCGGCGc- -3'
miRNA:   3'- -GCGaGCGCGCUGGGcAUGUGCCGCcu -5'
25364 3' -60.7 NC_005336.1 + 127563 0.74 0.291968
Target:  5'- cCGCUCGCGCGcgacaucAUCCGgcGCACGGCGc- -3'
miRNA:   3'- -GCGAGCGCGC-------UGGGCa-UGUGCCGCcu -5'
25364 3' -60.7 NC_005336.1 + 124678 0.74 0.305962
Target:  5'- gCGCggUGCuGCGGCCCGcgGCGuCGGCGGGc -3'
miRNA:   3'- -GCGa-GCG-CGCUGGGCa-UGU-GCCGCCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.