miRNA display CGI


Results 1 - 20 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25364 5' -55 NC_005336.1 + 123176 0.65 0.928401
Target:  5'- gCGcCUCGcGCGUGUugGAGGcggacGCGCGc- -3'
miRNA:   3'- -GC-GAGU-CGCACGugCUCUa----CGCGUuc -5'
25364 5' -55 NC_005336.1 + 77163 0.65 0.928401
Target:  5'- gCGCUCGcagacCGgGCGCGAGA-GCGCGu- -3'
miRNA:   3'- -GCGAGUc----GCaCGUGCUCUaCGCGUuc -5'
25364 5' -55 NC_005336.1 + 101732 0.65 0.928401
Target:  5'- uCGCUCGuCGcGCugGAGccGCGCGc- -3'
miRNA:   3'- -GCGAGUcGCaCGugCUCuaCGCGUuc -5'
25364 5' -55 NC_005336.1 + 80960 0.65 0.928401
Target:  5'- gCGCgCAGCGcGCA--GGcUGCGCAGGg -3'
miRNA:   3'- -GCGaGUCGCaCGUgcUCuACGCGUUC- -5'
25364 5' -55 NC_005336.1 + 130365 0.65 0.927865
Target:  5'- uGCUUccgacuGGCGUacccgcuGCGCGAGGU-CGCGAGc -3'
miRNA:   3'- gCGAG------UCGCA-------CGUGCUCUAcGCGUUC- -5'
25364 5' -55 NC_005336.1 + 41475 0.66 0.922931
Target:  5'- aCGCUCu-CGUGCGCGGcGUGCGgGu- -3'
miRNA:   3'- -GCGAGucGCACGUGCUcUACGCgUuc -5'
25364 5' -55 NC_005336.1 + 12635 0.66 0.922931
Target:  5'- uCGCgcgCcGCGUGCGCGGccucUGCGCGGc -3'
miRNA:   3'- -GCGa--GuCGCACGUGCUcu--ACGCGUUc -5'
25364 5' -55 NC_005336.1 + 74816 0.66 0.922931
Target:  5'- aCGCggagGGCGUGgGCGuGAUGgCGCGGc -3'
miRNA:   3'- -GCGag--UCGCACgUGCuCUAC-GCGUUc -5'
25364 5' -55 NC_005336.1 + 36368 0.66 0.922931
Target:  5'- cCGCggccugCAGCGcgcGCGCGAGcgcGCGCAc- -3'
miRNA:   3'- -GCGa-----GUCGCa--CGUGCUCua-CGCGUuc -5'
25364 5' -55 NC_005336.1 + 41607 0.66 0.922931
Target:  5'- cCGC-CAGCGc-CACGAGccgcUGCGCAAa -3'
miRNA:   3'- -GCGaGUCGCacGUGCUCu---ACGCGUUc -5'
25364 5' -55 NC_005336.1 + 24181 0.66 0.922931
Target:  5'- aGgUCGGCGgGCACGcAGAccuuguUGcCGCAGGa -3'
miRNA:   3'- gCgAGUCGCaCGUGC-UCU------AC-GCGUUC- -5'
25364 5' -55 NC_005336.1 + 101096 0.66 0.922931
Target:  5'- cCGCUCGGCGU-CugG-GAUgGCGCc-- -3'
miRNA:   3'- -GCGAGUCGCAcGugCuCUA-CGCGuuc -5'
25364 5' -55 NC_005336.1 + 77943 0.66 0.922931
Target:  5'- gCGCUgGuCGUGCGCGAGccGCcgggcugggGCGAGg -3'
miRNA:   3'- -GCGAgUcGCACGUGCUCuaCG---------CGUUC- -5'
25364 5' -55 NC_005336.1 + 133139 0.66 0.922931
Target:  5'- cCGCUgCuGCGcugGUuCGAGgcGCGCAAGg -3'
miRNA:   3'- -GCGA-GuCGCa--CGuGCUCuaCGCGUUC- -5'
25364 5' -55 NC_005336.1 + 106623 0.66 0.922931
Target:  5'- uCGCUCAcCGUGCA-GAGcacGCGCAu- -3'
miRNA:   3'- -GCGAGUcGCACGUgCUCua-CGCGUuc -5'
25364 5' -55 NC_005336.1 + 23572 0.66 0.917212
Target:  5'- cCGCggGGUGUGUugguGCGGGGUGCGgGGa -3'
miRNA:   3'- -GCGagUCGCACG----UGCUCUACGCgUUc -5'
25364 5' -55 NC_005336.1 + 9630 0.66 0.917212
Target:  5'- uGCgc-GCGaGCGCGGccuGGUGCGCGAGc -3'
miRNA:   3'- gCGaguCGCaCGUGCU---CUACGCGUUC- -5'
25364 5' -55 NC_005336.1 + 65779 0.66 0.917212
Target:  5'- aCGgaCGGCGUcucCGCGAGcGUGCGCGu- -3'
miRNA:   3'- -GCgaGUCGCAc--GUGCUC-UACGCGUuc -5'
25364 5' -55 NC_005336.1 + 107914 0.66 0.917212
Target:  5'- gCGCgCGGCGauguacaacgUGCugGAGAcGCuGCGAGu -3'
miRNA:   3'- -GCGaGUCGC----------ACGugCUCUaCG-CGUUC- -5'
25364 5' -55 NC_005336.1 + 69807 0.66 0.917212
Target:  5'- uGCUCAGCGUGUGCugcucGCGCu-- -3'
miRNA:   3'- gCGAGUCGCACGUGcucuaCGCGuuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.