miRNA display CGI


Results 1 - 20 of 110 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25369 3' -56 NC_005336.1 + 5560 0.66 0.8996
Target:  5'- gGACGUCGauguUCUGCGcGAgcgcgcUCUCGCccGCACa -3'
miRNA:   3'- -CUGUAGC----AGACGCuCU------GGAGCG--CGUG- -5'
25369 3' -56 NC_005336.1 + 62974 0.66 0.8996
Target:  5'- cGCaAUCGUCUucgcucCGAGGCCUUGgGCAg -3'
miRNA:   3'- cUG-UAGCAGAc-----GCUCUGGAGCgCGUg -5'
25369 3' -56 NC_005336.1 + 49451 0.66 0.8996
Target:  5'- cACGUUGUCgcucacCGAGACCUCggucaGCGuCACg -3'
miRNA:   3'- cUGUAGCAGac----GCUCUGGAG-----CGC-GUG- -5'
25369 3' -56 NC_005336.1 + 83236 0.66 0.8996
Target:  5'- -cCAUCuUCU-UGAuGACCUUGCGCGCg -3'
miRNA:   3'- cuGUAGcAGAcGCU-CUGGAGCGCGUG- -5'
25369 3' -56 NC_005336.1 + 29352 0.66 0.8996
Target:  5'- -cCAgCGUCgGCGAGacgcugGCCUUGgGCACg -3'
miRNA:   3'- cuGUaGCAGaCGCUC------UGGAGCgCGUG- -5'
25369 3' -56 NC_005336.1 + 9324 0.66 0.8996
Target:  5'- uGACcuccgCG-CUGCGcguGACCUCGCagaGCGCg -3'
miRNA:   3'- -CUGua---GCaGACGCu--CUGGAGCG---CGUG- -5'
25369 3' -56 NC_005336.1 + 131910 0.66 0.893007
Target:  5'- gGACGcCGggccCaGCGAGGCCUCGCGg-- -3'
miRNA:   3'- -CUGUaGCa---GaCGCUCUGGAGCGCgug -5'
25369 3' -56 NC_005336.1 + 97386 0.66 0.893007
Target:  5'- aGCAgcUCGUCguugGCGcGGCacaCGCGCACg -3'
miRNA:   3'- cUGU--AGCAGa---CGCuCUGga-GCGCGUG- -5'
25369 3' -56 NC_005336.1 + 9565 0.66 0.893007
Target:  5'- cGCggCGUUcGCGAGcaccAUCUCGCGCAg -3'
miRNA:   3'- cUGuaGCAGaCGCUC----UGGAGCGCGUg -5'
25369 3' -56 NC_005336.1 + 66167 0.66 0.886182
Target:  5'- uACAcCGUCUGCcGGAaggucgacaUCGCGCGCa -3'
miRNA:   3'- cUGUaGCAGACGcUCUgg-------AGCGCGUG- -5'
25369 3' -56 NC_005336.1 + 65302 0.66 0.886182
Target:  5'- aGCAUCGUCUGgGAGcGCaaaGCGCuCg -3'
miRNA:   3'- cUGUAGCAGACgCUC-UGgagCGCGuG- -5'
25369 3' -56 NC_005336.1 + 44190 0.66 0.885486
Target:  5'- gGACAUgaucgcgUGUCUgcccgcgcgGCGAGACCcCGCGCcCg -3'
miRNA:   3'- -CUGUA-------GCAGA---------CGCUCUGGaGCGCGuG- -5'
25369 3' -56 NC_005336.1 + 67303 0.66 0.879128
Target:  5'- gGACAUCGUCaagcucuucGCGGacaacggcuucGACCUCGUGgACc -3'
miRNA:   3'- -CUGUAGCAGa--------CGCU-----------CUGGAGCGCgUG- -5'
25369 3' -56 NC_005336.1 + 73301 0.66 0.879128
Target:  5'- gGACGUgGUgCUGgGGGAgaUCGUGCGCc -3'
miRNA:   3'- -CUGUAgCA-GACgCUCUggAGCGCGUG- -5'
25369 3' -56 NC_005336.1 + 27709 0.66 0.879128
Target:  5'- -uCAUCGUgCUGCGGcGCUUCGaggaGCACc -3'
miRNA:   3'- cuGUAGCA-GACGCUcUGGAGCg---CGUG- -5'
25369 3' -56 NC_005336.1 + 64400 0.66 0.879128
Target:  5'- gGACAUgacCUGgaaCGAGGCCUCGCuGCGCc -3'
miRNA:   3'- -CUGUAgcaGAC---GCUCUGGAGCG-CGUG- -5'
25369 3' -56 NC_005336.1 + 6467 0.66 0.879128
Target:  5'- cGAgAUCGagUCcGCG-GACC-CGCGCGCc -3'
miRNA:   3'- -CUgUAGC--AGaCGCuCUGGaGCGCGUG- -5'
25369 3' -56 NC_005336.1 + 103295 0.66 0.874788
Target:  5'- aGCG-CGUCUGCGAcuacgugcgcuccuACCcCGCGCGCg -3'
miRNA:   3'- cUGUaGCAGACGCUc-------------UGGaGCGCGUG- -5'
25369 3' -56 NC_005336.1 + 65274 0.66 0.87185
Target:  5'- aACGUCGUC-GCGAGGgcgcgcggcuCCgagGCGCGCg -3'
miRNA:   3'- cUGUAGCAGaCGCUCU----------GGag-CGCGUG- -5'
25369 3' -56 NC_005336.1 + 75077 0.66 0.87185
Target:  5'- ----cCGUCcGCGAGccgcGCCgCGCGCGCg -3'
miRNA:   3'- cuguaGCAGaCGCUC----UGGaGCGCGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.