miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25369 5' -50.4 NC_005336.1 + 18084 0.66 0.994299
Target:  5'- cCGCGCGCGAGGUCcagCAc------- -3'
miRNA:   3'- aGCGCGCGUUCCAGua-GUucuucuac -5'
25369 5' -50.4 NC_005336.1 + 7607 0.66 0.994299
Target:  5'- -aGCGCGgGAGaGUggaGUCGAGAucGGAUGc -3'
miRNA:   3'- agCGCGCgUUC-CAg--UAGUUCU--UCUAC- -5'
25369 5' -50.4 NC_005336.1 + 42794 0.66 0.994299
Target:  5'- gCGUGCGCAcgcgcAGGUCcgCgAAGAGGc-- -3'
miRNA:   3'- aGCGCGCGU-----UCCAGuaG-UUCUUCuac -5'
25369 5' -50.4 NC_005336.1 + 130383 0.66 0.994299
Target:  5'- cCGCuGCGCGAGGUCG-CGAGccAGcUGu -3'
miRNA:   3'- aGCG-CGCGUUCCAGUaGUUCu-UCuAC- -5'
25369 5' -50.4 NC_005336.1 + 104920 0.66 0.994299
Target:  5'- cCGCG-GCGGcGG-CAUCAAGAucggcgAGAUGg -3'
miRNA:   3'- aGCGCgCGUU-CCaGUAGUUCU------UCUAC- -5'
25369 5' -50.4 NC_005336.1 + 21847 0.66 0.994299
Target:  5'- aCGCGCGCGuGGcCGaCGAcgcGGAGGUGu -3'
miRNA:   3'- aGCGCGCGUuCCaGUaGUU---CUUCUAC- -5'
25369 5' -50.4 NC_005336.1 + 34488 0.66 0.994124
Target:  5'- cUCGCGCgGCAuGGUgAUCuucuuaaccgcGAAGGUGa -3'
miRNA:   3'- -AGCGCG-CGUuCCAgUAGuu---------CUUCUAC- -5'
25369 5' -50.4 NC_005336.1 + 57650 0.66 0.993946
Target:  5'- cCGCGCGCAAGGcguaccgcaugaaCAUCGAGcucAUGa -3'
miRNA:   3'- aGCGCGCGUUCCa------------GUAGUUCuucUAC- -5'
25369 5' -50.4 NC_005336.1 + 87799 0.66 0.993384
Target:  5'- aCuCGCGCAGGuUCGUgcGGAAGAUGu -3'
miRNA:   3'- aGcGCGCGUUCcAGUAguUCUUCUAC- -5'
25369 5' -50.4 NC_005336.1 + 26359 0.66 0.993384
Target:  5'- gCGCGCGCGccgcGGaGUCcgCGAGGuccacGGUGa -3'
miRNA:   3'- aGCGCGCGU----UC-CAGuaGUUCUu----CUAC- -5'
25369 5' -50.4 NC_005336.1 + 40124 0.66 0.993384
Target:  5'- -gGCGUGU--GGUcCAUCGAGuAGAUGa -3'
miRNA:   3'- agCGCGCGuuCCA-GUAGUUCuUCUAC- -5'
25369 5' -50.4 NC_005336.1 + 131525 0.66 0.993384
Target:  5'- cCGCGCGCGAGcGUCAUgCGcGAGc--- -3'
miRNA:   3'- aGCGCGCGUUC-CAGUA-GUuCUUcuac -5'
25369 5' -50.4 NC_005336.1 + 125288 0.66 0.993384
Target:  5'- aCGCGCGCGAGaaCAUCGAGc----- -3'
miRNA:   3'- aGCGCGCGUUCcaGUAGUUCuucuac -5'
25369 5' -50.4 NC_005336.1 + 61908 0.66 0.992676
Target:  5'- gUCGCGCGCguuGagcagcgccgggaagAGGUCGcagaggugccggcUCGAGAGGAa- -3'
miRNA:   3'- -AGCGCGCG---U---------------UCCAGU-------------AGUUCUUCUac -5'
25369 5' -50.4 NC_005336.1 + 24351 0.66 0.992355
Target:  5'- gCGCGUGCuaGAGGaCAugcUCGcggAGGAGAUGa -3'
miRNA:   3'- aGCGCGCG--UUCCaGU---AGU---UCUUCUAC- -5'
25369 5' -50.4 NC_005336.1 + 92452 0.66 0.992355
Target:  5'- aUCGUGUccGCGAGGUCGcgcUCGGGcacGAUGu -3'
miRNA:   3'- -AGCGCG--CGUUCCAGU---AGUUCuu-CUAC- -5'
25369 5' -50.4 NC_005336.1 + 25411 0.66 0.992023
Target:  5'- uUCGCGCGCucGGcggcuaagccgaguUCAaUAAGGAGGUa -3'
miRNA:   3'- -AGCGCGCGuuCC--------------AGUaGUUCUUCUAc -5'
25369 5' -50.4 NC_005336.1 + 100884 0.66 0.991203
Target:  5'- gCGCGCGCGcGGUCGgcgcggCGcGGAGGc- -3'
miRNA:   3'- aGCGCGCGUuCCAGUa-----GUuCUUCUac -5'
25369 5' -50.4 NC_005336.1 + 43470 0.66 0.991203
Target:  5'- gCGCcCGCGAGGaCAagCAGGAGGAc- -3'
miRNA:   3'- aGCGcGCGUUCCaGUa-GUUCUUCUac -5'
25369 5' -50.4 NC_005336.1 + 36489 0.66 0.990705
Target:  5'- gUCGCGCGCGGGGUaggagcgcacguaGUCGcAGAcgcgcuuGGUGa -3'
miRNA:   3'- -AGCGCGCGUUCCAg------------UAGU-UCUu------CUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.