miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25369 5' -50.4 NC_005336.1 + 56561 1.1 0.006972
Target:  5'- cUCGCGCGCAAGGUCAUCAAGAAGAUGg -3'
miRNA:   3'- -AGCGCGCGUUCCAGUAGUUCUUCUAC- -5'
25369 5' -50.4 NC_005336.1 + 127623 0.8 0.467478
Target:  5'- aCGCGCGCuAGcGUCAUCGAGAcgcuGGUGg -3'
miRNA:   3'- aGCGCGCGuUC-CAGUAGUUCUu---CUAC- -5'
25369 5' -50.4 NC_005336.1 + 7385 0.78 0.538452
Target:  5'- gCGCGCGCGAGG--AUCAuGGAGGUGg -3'
miRNA:   3'- aGCGCGCGUUCCagUAGUuCUUCUAC- -5'
25369 5' -50.4 NC_005336.1 + 74599 0.77 0.634239
Target:  5'- gUGCuGCGCGAGGUCGagGAGGAGAc- -3'
miRNA:   3'- aGCG-CGCGUUCCAGUagUUCUUCUac -5'
25369 5' -50.4 NC_005336.1 + 83269 0.76 0.644987
Target:  5'- cCGUGCGCGAGGUC-UCGcAGAcGAUGu -3'
miRNA:   3'- aGCGCGCGUUCCAGuAGU-UCUuCUAC- -5'
25369 5' -50.4 NC_005336.1 + 24266 0.76 0.655724
Target:  5'- aCGCGCGCGAGGUCGUgCAcguggccGAGGAc- -3'
miRNA:   3'- aGCGCGCGUUCCAGUA-GUu------CUUCUac -5'
25369 5' -50.4 NC_005336.1 + 49171 0.74 0.780018
Target:  5'- aUCGCGCGCAgccugggcaAGGUCugcugcagCAAGGAGGa- -3'
miRNA:   3'- -AGCGCGCGU---------UCCAGua------GUUCUUCUac -5'
25369 5' -50.4 NC_005336.1 + 37466 0.74 0.789678
Target:  5'- gCGCGCGCGAGGUCGUCc-------- -3'
miRNA:   3'- aGCGCGCGUUCCAGUAGuucuucuac -5'
25369 5' -50.4 NC_005336.1 + 55150 0.74 0.799181
Target:  5'- cCGCGCGCucGGUCAUCGGGcccGAc- -3'
miRNA:   3'- aGCGCGCGuuCCAGUAGUUCuu-CUac -5'
25369 5' -50.4 NC_005336.1 + 15192 0.73 0.832817
Target:  5'- gCGCGCGCAgucguuguccggcgGGGUCcAUCGGGGAGu-- -3'
miRNA:   3'- aGCGCGCGU--------------UCCAG-UAGUUCUUCuac -5'
25369 5' -50.4 NC_005336.1 + 50664 0.73 0.83543
Target:  5'- cUCGCGCGCGAGGUCGcaCAcGGGcGUGa -3'
miRNA:   3'- -AGCGCGCGUUCCAGUa-GUuCUUcUAC- -5'
25369 5' -50.4 NC_005336.1 + 91619 0.72 0.852367
Target:  5'- gCGCGCGCGAGGUUGUCGccGAcGAc- -3'
miRNA:   3'- aGCGCGCGUUCCAGUAGUu-CUuCUac -5'
25369 5' -50.4 NC_005336.1 + 42239 0.72 0.860509
Target:  5'- cCGUGCGCGGcGUCGcggUCAGGAAGAa- -3'
miRNA:   3'- aGCGCGCGUUcCAGU---AGUUCUUCUac -5'
25369 5' -50.4 NC_005336.1 + 46124 0.72 0.868424
Target:  5'- aUCGUGUaCGGGGUCGUCAAGAAcGGc- -3'
miRNA:   3'- -AGCGCGcGUUCCAGUAGUUCUU-CUac -5'
25369 5' -50.4 NC_005336.1 + 38169 0.72 0.868424
Target:  5'- cCGCGCGCAuGGUCGaCGAcGAGGGc- -3'
miRNA:   3'- aGCGCGCGUuCCAGUaGUU-CUUCUac -5'
25369 5' -50.4 NC_005336.1 + 70478 0.71 0.890739
Target:  5'- gCGCaaGCGCAAGGUCGUgGAGAc---- -3'
miRNA:   3'- aGCG--CGCGUUCCAGUAgUUCUucuac -5'
25369 5' -50.4 NC_005336.1 + 42330 0.71 0.897682
Target:  5'- cUGCgGCGCu-GGUCGUCAAGGAGu-- -3'
miRNA:   3'- aGCG-CGCGuuCCAGUAGUUCUUCuac -5'
25369 5' -50.4 NC_005336.1 + 38685 0.71 0.91697
Target:  5'- cCGCGCGCAcGGUgGugcUCAGGAAGu-- -3'
miRNA:   3'- aGCGCGCGUuCCAgU---AGUUCUUCuac -5'
25369 5' -50.4 NC_005336.1 + 88493 0.7 0.9339
Target:  5'- aCGCGCGCGGGcG-CGcgCGAGAAGAc- -3'
miRNA:   3'- aGCGCGCGUUC-CaGUa-GUUCUUCUac -5'
25369 5' -50.4 NC_005336.1 + 69204 0.7 0.9339
Target:  5'- uUCGCGCGCGagcgggccuucgAGGUCAUCAAcgccuuauuGGAGc-- -3'
miRNA:   3'- -AGCGCGCGU------------UCCAGUAGUU---------CUUCuac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.