miRNA display CGI


Results 1 - 20 of 230 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25375 5' -59.6 NC_005336.1 + 110770 0.66 0.730166
Target:  5'- aUGuCGgCGGCCGCGUcuucaugugcgAGaacUGCGCGAGc -3'
miRNA:   3'- aACuGCgGCCGGUGCG-----------UC---ACGUGCUC- -5'
25375 5' -59.6 NC_005336.1 + 134209 0.66 0.730166
Target:  5'- --aACGCCGGaCCcCGCcuGUGCggGCGAGa -3'
miRNA:   3'- aacUGCGGCC-GGuGCGu-CACG--UGCUC- -5'
25375 5' -59.6 NC_005336.1 + 68259 0.66 0.730166
Target:  5'- -cGGCGCUGGuCCugGCcugGGgcgcGCGCGAu -3'
miRNA:   3'- aaCUGCGGCC-GGugCG---UCa---CGUGCUc -5'
25375 5' -59.6 NC_005336.1 + 95214 0.66 0.730166
Target:  5'- aUGACGCCaGCCGCGagcgccgccacCAGgaagggcgGCACGGc -3'
miRNA:   3'- aACUGCGGcCGGUGC-----------GUCa-------CGUGCUc -5'
25375 5' -59.6 NC_005336.1 + 88441 0.66 0.730166
Target:  5'- -cGGCGCCGGCgGa--GG-GCACGGGc -3'
miRNA:   3'- aaCUGCGGCCGgUgcgUCaCGUGCUC- -5'
25375 5' -59.6 NC_005336.1 + 65287 0.66 0.730166
Target:  5'- -gGGCGCgCGGCUcCGaGGcGCGCGAGa -3'
miRNA:   3'- aaCUGCG-GCCGGuGCgUCaCGUGCUC- -5'
25375 5' -59.6 NC_005336.1 + 127166 0.66 0.72036
Target:  5'- -aGAgGCC-GCgCACGCGGcGCGCGAu -3'
miRNA:   3'- aaCUgCGGcCG-GUGCGUCaCGUGCUc -5'
25375 5' -59.6 NC_005336.1 + 105522 0.66 0.72036
Target:  5'- --cGCGCCccagucGCCGCGCGcGUGCGcCGGGg -3'
miRNA:   3'- aacUGCGGc-----CGGUGCGU-CACGU-GCUC- -5'
25375 5' -59.6 NC_005336.1 + 23992 0.66 0.72036
Target:  5'- --cGCGCCGGCUccgucuugaagGUGCAGUaCACGAGg -3'
miRNA:   3'- aacUGCGGCCGG-----------UGCGUCAcGUGCUC- -5'
25375 5' -59.6 NC_005336.1 + 28523 0.66 0.72036
Target:  5'- gUGugGCCGGaCCACauccacaaGGUcaccacGCACGAGg -3'
miRNA:   3'- aACugCGGCC-GGUGcg------UCA------CGUGCUC- -5'
25375 5' -59.6 NC_005336.1 + 59362 0.66 0.72036
Target:  5'- -gGGCGUCGGCCuGCGCGccgccggcagcGUGCcgcauCGAGu -3'
miRNA:   3'- aaCUGCGGCCGG-UGCGU-----------CACGu----GCUC- -5'
25375 5' -59.6 NC_005336.1 + 34296 0.66 0.72036
Target:  5'- -gGGCGCgCGcaGCUACuGCGGUGCGCGu- -3'
miRNA:   3'- aaCUGCG-GC--CGGUG-CGUCACGUGCuc -5'
25375 5' -59.6 NC_005336.1 + 13052 0.66 0.72036
Target:  5'- -cGACGCCugccacgacGGCCccaacgccgagaGCGCGGUGCagGCGGc -3'
miRNA:   3'- aaCUGCGG---------CCGG------------UGCGUCACG--UGCUc -5'
25375 5' -59.6 NC_005336.1 + 51424 0.66 0.72036
Target:  5'- -cGGCGCCGacgacGCC-CGUGGUGCACc-- -3'
miRNA:   3'- aaCUGCGGC-----CGGuGCGUCACGUGcuc -5'
25375 5' -59.6 NC_005336.1 + 6272 0.66 0.714441
Target:  5'- --cGCGCCGGCCgcggucacgcugagcGCGCGcGUGCuguCGAa -3'
miRNA:   3'- aacUGCGGCCGG---------------UGCGU-CACGu--GCUc -5'
25375 5' -59.6 NC_005336.1 + 47728 0.66 0.71048
Target:  5'- gUGACG-CGGCgCACGaacaaaCAG-GCGCGAGa -3'
miRNA:   3'- aACUGCgGCCG-GUGC------GUCaCGUGCUC- -5'
25375 5' -59.6 NC_005336.1 + 37706 0.66 0.71048
Target:  5'- --aGCGCC-GCCA-GCGGgaUGCACGAGa -3'
miRNA:   3'- aacUGCGGcCGGUgCGUC--ACGUGCUC- -5'
25375 5' -59.6 NC_005336.1 + 33230 0.66 0.71048
Target:  5'- gUGuuGUCGGgCACcaGGUGCGCGAGg -3'
miRNA:   3'- aACugCGGCCgGUGcgUCACGUGCUC- -5'
25375 5' -59.6 NC_005336.1 + 102875 0.66 0.71048
Target:  5'- -aGGCGCUGGCCAUGgAcGaGCuCGAGa -3'
miRNA:   3'- aaCUGCGGCCGGUGCgU-CaCGuGCUC- -5'
25375 5' -59.6 NC_005336.1 + 13954 0.66 0.71048
Target:  5'- cUUGA-GCaCGGCCACGUAGU-CACGu- -3'
miRNA:   3'- -AACUgCG-GCCGGUGCGUCAcGUGCuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.