miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25380 3' -57.4 NC_005336.1 + 20317 0.66 0.838031
Target:  5'- --cUCGCUgacgGGUGCGUcggcgucguUGCugGcGCCACa -3'
miRNA:   3'- ucuAGCGA----CCACGCG---------ACGugC-UGGUG- -5'
25380 3' -57.4 NC_005336.1 + 99896 0.66 0.838031
Target:  5'- uGGAggaGCUGcGccgagcgGUGgaGCGCGACCGCg -3'
miRNA:   3'- -UCUag-CGAC-Ca------CGCgaCGUGCUGGUG- -5'
25380 3' -57.4 NC_005336.1 + 103786 0.66 0.838031
Target:  5'- gGGAUCGgUac--CGCUGCGCGACgCGCa -3'
miRNA:   3'- -UCUAGCgAccacGCGACGUGCUG-GUG- -5'
25380 3' -57.4 NC_005336.1 + 65996 0.66 0.838031
Target:  5'- cGG-CGCcgUGGagGCGCUGCGCGGCg-- -3'
miRNA:   3'- uCUaGCG--ACCa-CGCGACGUGCUGgug -5'
25380 3' -57.4 NC_005336.1 + 80948 0.66 0.838031
Target:  5'- cAGcgUGgaGGUGCGCgcagcGCGCaGGCUGCg -3'
miRNA:   3'- -UCuaGCgaCCACGCGa----CGUG-CUGGUG- -5'
25380 3' -57.4 NC_005336.1 + 12631 0.66 0.829687
Target:  5'- uGGAUCGCgcgccGcGUGCGCggccucUGCGCGgcGCUGCg -3'
miRNA:   3'- -UCUAGCGa----C-CACGCG------ACGUGC--UGGUG- -5'
25380 3' -57.4 NC_005336.1 + 131843 0.66 0.829687
Target:  5'- cGGUCGCcGGcGCGUUGU-CGACaCACc -3'
miRNA:   3'- uCUAGCGaCCaCGCGACGuGCUG-GUG- -5'
25380 3' -57.4 NC_005336.1 + 64075 0.66 0.829687
Target:  5'- cGGAcgucUCGCUGcucGCggaGCUGCGCGAgCGCa -3'
miRNA:   3'- -UCU----AGCGACca-CG---CGACGUGCUgGUG- -5'
25380 3' -57.4 NC_005336.1 + 46142 0.66 0.829687
Target:  5'- cAGAcgCGCgaGGUccGCGCUGUugcccGCGugCACg -3'
miRNA:   3'- -UCUa-GCGa-CCA--CGCGACG-----UGCugGUG- -5'
25380 3' -57.4 NC_005336.1 + 7839 0.66 0.821163
Target:  5'- cGGuagCGC-GGaUGCGCcgGCGCGcGCCACa -3'
miRNA:   3'- -UCua-GCGaCC-ACGCGa-CGUGC-UGGUG- -5'
25380 3' -57.4 NC_005336.1 + 36414 0.66 0.821163
Target:  5'- --cUCGCgaaagGCGCU-CGCGACCGCg -3'
miRNA:   3'- ucuAGCGacca-CGCGAcGUGCUGGUG- -5'
25380 3' -57.4 NC_005336.1 + 43873 0.66 0.821163
Target:  5'- cGGGcUCGCUGcUGCGC-GCA-GACUACg -3'
miRNA:   3'- -UCU-AGCGACcACGCGaCGUgCUGGUG- -5'
25380 3' -57.4 NC_005336.1 + 106329 0.66 0.813341
Target:  5'- cAGAucUCGCagGGgcucaucucgcgcucGCgGCUGCACGACUACc -3'
miRNA:   3'- -UCU--AGCGa-CCa--------------CG-CGACGUGCUGGUG- -5'
25380 3' -57.4 NC_005336.1 + 39636 0.66 0.812464
Target:  5'- cGAUCa-UGGcUGCGCgcGCGCGAUCGCc -3'
miRNA:   3'- uCUAGcgACC-ACGCGa-CGUGCUGGUG- -5'
25380 3' -57.4 NC_005336.1 + 62601 0.66 0.812464
Target:  5'- --cUCGCUGGacccGCgGCUGCugGgcgccuACCACg -3'
miRNA:   3'- ucuAGCGACCa---CG-CGACGugC------UGGUG- -5'
25380 3' -57.4 NC_005336.1 + 51390 0.66 0.812464
Target:  5'- ----gGCUGGaacaugGCGCUGCcucGCGACCcGCg -3'
miRNA:   3'- ucuagCGACCa-----CGCGACG---UGCUGG-UG- -5'
25380 3' -57.4 NC_005336.1 + 28719 0.66 0.812464
Target:  5'- -uGUCGCUGGUGCugcuCUGC-CaGACCuACa -3'
miRNA:   3'- ucUAGCGACCACGc---GACGuG-CUGG-UG- -5'
25380 3' -57.4 NC_005336.1 + 71550 0.66 0.807165
Target:  5'- ----gGCUGGccgcgcacuucaacgUGCGCgUGCACGGCgGCg -3'
miRNA:   3'- ucuagCGACC---------------ACGCG-ACGUGCUGgUG- -5'
25380 3' -57.4 NC_005336.1 + 60020 0.66 0.8036
Target:  5'- gAGGUUGaggUGGUGUGCcGCGCGgcGCUGCa -3'
miRNA:   3'- -UCUAGCg--ACCACGCGaCGUGC--UGGUG- -5'
25380 3' -57.4 NC_005336.1 + 128259 0.66 0.8036
Target:  5'- cGG-CGCUGGccGCGCgcguggaGCGCGugCGCc -3'
miRNA:   3'- uCUaGCGACCa-CGCGa------CGUGCugGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.