miRNA display CGI


Results 1 - 20 of 71 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25388 3' -51.7 NC_005336.1 + 50705 0.66 0.98589
Target:  5'- cGCaGGGGCGcGAGUGC-GCUUcCCGCGc -3'
miRNA:   3'- cCGgUUUUGC-CUCACGaUGAA-GGCGU- -5'
25388 3' -51.7 NC_005336.1 + 125472 0.66 0.98589
Target:  5'- uGGCCucgcugcGAugGGugcgcGUGCgUGCggUCCGCAg -3'
miRNA:   3'- -CCGGu------UUugCCu----CACG-AUGa-AGGCGU- -5'
25388 3' -51.7 NC_005336.1 + 78917 0.66 0.98589
Target:  5'- aGGCCG--ACGGuGUGCgcggaggugGCgcggcCCGCAg -3'
miRNA:   3'- -CCGGUuuUGCCuCACGa--------UGaa---GGCGU- -5'
25388 3' -51.7 NC_005336.1 + 110790 0.66 0.98589
Target:  5'- cGCCGGGcuGCGG-GUGCgAgUUCUGCGc -3'
miRNA:   3'- cCGGUUU--UGCCuCACGaUgAAGGCGU- -5'
25388 3' -51.7 NC_005336.1 + 114179 0.66 0.98589
Target:  5'- cGGCCAAcuccguguACGG---GCUcauggGCUUCCGCAa -3'
miRNA:   3'- -CCGGUUu-------UGCCucaCGA-----UGAAGGCGU- -5'
25388 3' -51.7 NC_005336.1 + 53581 0.66 0.98589
Target:  5'- cGGCCAugcagcgcguGGGCGGGcgccgcgaggccGUGCUcaaGCUcCCGCGc -3'
miRNA:   3'- -CCGGU----------UUUGCCU------------CACGA---UGAaGGCGU- -5'
25388 3' -51.7 NC_005336.1 + 56004 0.66 0.98589
Target:  5'- uGGCCAucuACGGcuucgGCgugacCUUCCGCGa -3'
miRNA:   3'- -CCGGUuu-UGCCuca--CGau---GAAGGCGU- -5'
25388 3' -51.7 NC_005336.1 + 9642 0.66 0.984071
Target:  5'- cGGCCugguGCGcGAGcGCUGCgUCCGa- -3'
miRNA:   3'- -CCGGuuu-UGC-CUCaCGAUGaAGGCgu -5'
25388 3' -51.7 NC_005336.1 + 132639 0.66 0.984071
Target:  5'- uGGCaacuGAcGCGGAcGUGa-ACUUCCGCGg -3'
miRNA:   3'- -CCGg---UUuUGCCU-CACgaUGAAGGCGU- -5'
25388 3' -51.7 NC_005336.1 + 44880 0.66 0.984071
Target:  5'- aGGCCGuGACGGAGccCUGCgcgauagaCGCAu -3'
miRNA:   3'- -CCGGUuUUGCCUCacGAUGaag-----GCGU- -5'
25388 3' -51.7 NC_005336.1 + 69789 0.66 0.982078
Target:  5'- aGGUCucccagcAGACGGugcucagcguGUGCUGCUcgcgcUCCGCGa -3'
miRNA:   3'- -CCGGu------UUUGCCu---------CACGAUGA-----AGGCGU- -5'
25388 3' -51.7 NC_005336.1 + 99804 0.66 0.982078
Target:  5'- cGCCGucagcgaGGAGgGCUACgucUUCCGCGu -3'
miRNA:   3'- cCGGUuuug---CCUCaCGAUG---AAGGCGU- -5'
25388 3' -51.7 NC_005336.1 + 124661 0.66 0.979904
Target:  5'- gGGC---GGCGGcGUGCUGCacCCGCGc -3'
miRNA:   3'- -CCGguuUUGCCuCACGAUGaaGGCGU- -5'
25388 3' -51.7 NC_005336.1 + 130764 0.66 0.979904
Target:  5'- cGCCcu--CGGGGcGCUGCUcggcgguggUCCGCGc -3'
miRNA:   3'- cCGGuuuuGCCUCaCGAUGA---------AGGCGU- -5'
25388 3' -51.7 NC_005336.1 + 44275 0.66 0.979904
Target:  5'- cGCCGcgcCGGAGUGC-GCUUgcgUCGCAg -3'
miRNA:   3'- cCGGUuuuGCCUCACGaUGAA---GGCGU- -5'
25388 3' -51.7 NC_005336.1 + 48763 0.66 0.979904
Target:  5'- aGGCCGuGAUGGAcGUGCUcGCgaaggCCaGCAc -3'
miRNA:   3'- -CCGGUuUUGCCU-CACGA-UGaa---GG-CGU- -5'
25388 3' -51.7 NC_005336.1 + 125306 0.66 0.979216
Target:  5'- cGGCCGGaccacuucuccaucGACGacgagugcGuGUGCUGCgagcgUCCGCAc -3'
miRNA:   3'- -CCGGUU--------------UUGC--------CuCACGAUGa----AGGCGU- -5'
25388 3' -51.7 NC_005336.1 + 68292 0.66 0.97754
Target:  5'- aGCCGcuGCGGGcGUGCgUGCUggCGCGc -3'
miRNA:   3'- cCGGUuuUGCCU-CACG-AUGAagGCGU- -5'
25388 3' -51.7 NC_005336.1 + 87428 0.66 0.97754
Target:  5'- cGGCCGgggaucuuGGGCGGcucGUGCUuCU-CCGCGa -3'
miRNA:   3'- -CCGGU--------UUUGCCu--CACGAuGAaGGCGU- -5'
25388 3' -51.7 NC_005336.1 + 72224 0.67 0.972207
Target:  5'- uGGCU--GGCGGAGcUGUUcaacgcCUUCCGCGc -3'
miRNA:   3'- -CCGGuuUUGCCUC-ACGAu-----GAAGGCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.