miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25388 5' -55.7 NC_005336.1 + 24421 0.66 0.914998
Target:  5'- aUCUGCGaGGAcaACCuGCuCUCGGccGUGg -3'
miRNA:   3'- -AGAUGC-CCU--UGGuCGuGAGCCacCAC- -5'
25388 5' -55.7 NC_005336.1 + 84086 0.66 0.914998
Target:  5'- --cGCGGGAACCGGCGCggGGcacgcaGGa- -3'
miRNA:   3'- agaUGCCCUUGGUCGUGagCCa-----CCac -5'
25388 5' -55.7 NC_005336.1 + 69780 0.66 0.902784
Target:  5'- gCUGCuGGAccuguGCCGGCGCUCGGa---- -3'
miRNA:   3'- aGAUGcCCU-----UGGUCGUGAGCCaccac -5'
25388 5' -55.7 NC_005336.1 + 38677 0.66 0.902784
Target:  5'- gCU-CGGGu-CCGcGCGCaCGGUGGUGc -3'
miRNA:   3'- aGAuGCCCuuGGU-CGUGaGCCACCAC- -5'
25388 5' -55.7 NC_005336.1 + 64489 0.66 0.902784
Target:  5'- gCUACGuGAACguGCACUUcGUGGUc -3'
miRNA:   3'- aGAUGCcCUUGguCGUGAGcCACCAc -5'
25388 5' -55.7 NC_005336.1 + 60191 0.66 0.896322
Target:  5'- --cGCGGGGGCCGGCGa-CGG-GGcUGg -3'
miRNA:   3'- agaUGCCCUUGGUCGUgaGCCaCC-AC- -5'
25388 5' -55.7 NC_005336.1 + 123759 0.66 0.889627
Target:  5'- --gGCGGGAgaggugGCCuGCGCUCGcagccgGGUGa -3'
miRNA:   3'- agaUGCCCU------UGGuCGUGAGCca----CCAC- -5'
25388 5' -55.7 NC_005336.1 + 51686 0.66 0.889627
Target:  5'- ---cCGGGuGCCGGCGCUCGcGcUGGa- -3'
miRNA:   3'- agauGCCCuUGGUCGUGAGC-C-ACCac -5'
25388 5' -55.7 NC_005336.1 + 135543 0.67 0.86818
Target:  5'- uUCUGgGGGcagGACaCAGCGacggCGGUGGUa -3'
miRNA:   3'- -AGAUgCCC---UUG-GUCGUga--GCCACCAc -5'
25388 5' -55.7 NC_005336.1 + 102356 0.67 0.865927
Target:  5'- --cGCGGGcgUCAGCACgggcgugaacaccaaGGUGGUGc -3'
miRNA:   3'- agaUGCCCuuGGUCGUGag-------------CCACCAC- -5'
25388 5' -55.7 NC_005336.1 + 86327 0.67 0.860595
Target:  5'- --aGCGGGAACUugguGUGCUCGcgcugcauguacGUGGUGa -3'
miRNA:   3'- agaUGCCCUUGGu---CGUGAGC------------CACCAC- -5'
25388 5' -55.7 NC_005336.1 + 123829 0.67 0.8528
Target:  5'- uUCUGCucguGCCGGCGCUCGGUGc-- -3'
miRNA:   3'- -AGAUGcccuUGGUCGUGAGCCACcac -5'
25388 5' -55.7 NC_005336.1 + 75149 0.67 0.844803
Target:  5'- gCgcCGGGAAgCGGCGCUCGGgcgcGGc- -3'
miRNA:   3'- aGauGCCCUUgGUCGUGAGCCa---CCac -5'
25388 5' -55.7 NC_005336.1 + 31344 0.68 0.837438
Target:  5'- --cGCGGGGACCAGUugUaggcgaacgcgaagaGGUGcGUGu -3'
miRNA:   3'- agaUGCCCUUGGUCGugAg--------------CCAC-CAC- -5'
25388 5' -55.7 NC_005336.1 + 136539 0.68 0.827381
Target:  5'- cCUGCGGGAcgacuucgagcugACCuGCGucgCGGUGGUc -3'
miRNA:   3'- aGAUGCCCU-------------UGGuCGUga-GCCACCAc -5'
25388 5' -55.7 NC_005336.1 + 136539 0.68 0.827381
Target:  5'- cCUGCGGGAcgacuucgagcugACCuGCGucgCGGUGGUc -3'
miRNA:   3'- aGAUGCCCU-------------UGGuCGUga-GCCACCAc -5'
25388 5' -55.7 NC_005336.1 + 133094 0.68 0.819668
Target:  5'- --cGCGcGGAggaagGCCAGCGgccCUCGGUGGa- -3'
miRNA:   3'- agaUGC-CCU-----UGGUCGU---GAGCCACCac -5'
25388 5' -55.7 NC_005336.1 + 112425 0.68 0.814448
Target:  5'- ---cCGGaGcGCCAGCGCUCGGagauagagcugugucUGGUGg -3'
miRNA:   3'- agauGCC-CuUGGUCGUGAGCC---------------ACCAC- -5'
25388 5' -55.7 NC_005336.1 + 107562 0.68 0.792981
Target:  5'- -gUGC-GGAACCAcCGCUUGGUGGUc -3'
miRNA:   3'- agAUGcCCUUGGUcGUGAGCCACCAc -5'
25388 5' -55.7 NC_005336.1 + 65391 0.7 0.720024
Target:  5'- -gUACcGGcGCCGGCACgcgaccacgagcccgUCGGUGGUGg -3'
miRNA:   3'- agAUGcCCuUGGUCGUG---------------AGCCACCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.