miRNA display CGI


Results 1 - 20 of 208 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25390 3' -62.3 NC_005336.1 + 9265 0.65 0.640803
Target:  5'- uCGUCC-GGCUcucggccagccgccGC-GCGCGGCGCGAg- -3'
miRNA:   3'- -GCGGGaCCGA--------------CGaCGCGCUGCGCUgc -5'
25390 3' -62.3 NC_005336.1 + 40632 0.66 0.633907
Target:  5'- gCGCCgCUGGCagaGUUGaagGCGGCGCcGCGc -3'
miRNA:   3'- -GCGG-GACCGa--CGACg--CGCUGCGcUGC- -5'
25390 3' -62.3 NC_005336.1 + 50183 0.66 0.633907
Target:  5'- aCGCCCgaaGaggGgUGCGCGGCcgGCGGCGa -3'
miRNA:   3'- -GCGGGac-Cga-CgACGCGCUG--CGCUGC- -5'
25390 3' -62.3 NC_005336.1 + 30670 0.66 0.633907
Target:  5'- gCGCaagaagUGGC-GCUGCGUgcucuucaagGGCGCGGCGg -3'
miRNA:   3'- -GCGgg----ACCGaCGACGCG----------CUGCGCUGC- -5'
25390 3' -62.3 NC_005336.1 + 125345 0.66 0.633907
Target:  5'- aCGUgCUGGacgaCUGuCUGCGCGAgGCcaugGACGa -3'
miRNA:   3'- -GCGgGACC----GAC-GACGCGCUgCG----CUGC- -5'
25390 3' -62.3 NC_005336.1 + 23340 0.66 0.633907
Target:  5'- aCGCCCgagcGGCacaucgaGCUcGCGCGGuaccUGCGGCGc -3'
miRNA:   3'- -GCGGGa---CCGa------CGA-CGCGCU----GCGCUGC- -5'
25390 3' -62.3 NC_005336.1 + 30493 0.66 0.633907
Target:  5'- gGCCCUcgcGGCgGCgGcCGCGAuguuCGUGACGc -3'
miRNA:   3'- gCGGGA---CCGaCGaC-GCGCU----GCGCUGC- -5'
25390 3' -62.3 NC_005336.1 + 63603 0.66 0.633907
Target:  5'- gGCCgUGaacCUGCUGCGCcccGGCGUGGuCGg -3'
miRNA:   3'- gCGGgACc--GACGACGCG---CUGCGCU-GC- -5'
25390 3' -62.3 NC_005336.1 + 11863 0.66 0.633907
Target:  5'- gCGCCaagGGCagcGCUGUGCGcacgGCGCGcGCGc -3'
miRNA:   3'- -GCGGga-CCGa--CGACGCGC----UGCGC-UGC- -5'
25390 3' -62.3 NC_005336.1 + 118771 0.66 0.633907
Target:  5'- gGCgaUGGaCgaacaccgGCUGCGCGAccuCGCGGCGa -3'
miRNA:   3'- gCGggACC-Ga-------CGACGCGCU---GCGCUGC- -5'
25390 3' -62.3 NC_005336.1 + 99596 0.66 0.633907
Target:  5'- uGCCC-GG-UGCUGaucucCGCG-CGCGGCGa -3'
miRNA:   3'- gCGGGaCCgACGAC-----GCGCuGCGCUGC- -5'
25390 3' -62.3 NC_005336.1 + 128107 0.66 0.627995
Target:  5'- cCGCgCCUGcgaggcggaggucgcGCUGCUGCGgCGcACGCGcCu -3'
miRNA:   3'- -GCG-GGAC---------------CGACGACGC-GC-UGCGCuGc -5'
25390 3' -62.3 NC_005336.1 + 101547 0.66 0.624054
Target:  5'- aCGCCCgcgucugcGGCgaGCUcggcgacgcGCGCGccggGCGCGGCGc -3'
miRNA:   3'- -GCGGGa-------CCGa-CGA---------CGCGC----UGCGCUGC- -5'
25390 3' -62.3 NC_005336.1 + 24503 0.66 0.624054
Target:  5'- uGCCCUGGCaGg-GCGCGAC-C-ACGg -3'
miRNA:   3'- gCGGGACCGaCgaCGCGCUGcGcUGC- -5'
25390 3' -62.3 NC_005336.1 + 43629 0.66 0.624054
Target:  5'- aCGCCgUGGagaucgucuuCUGCgacgGCGuCGACGCGGa- -3'
miRNA:   3'- -GCGGgACC----------GACGa---CGC-GCUGCGCUgc -5'
25390 3' -62.3 NC_005336.1 + 94281 0.66 0.624054
Target:  5'- gCGCCCgggGGgaGCagguccuuguUGCGCGGaaCGGCGg -3'
miRNA:   3'- -GCGGGa--CCgaCG----------ACGCGCUgcGCUGC- -5'
25390 3' -62.3 NC_005336.1 + 110537 0.66 0.624054
Target:  5'- aCGCCUcccGCaGCaGCGUGGCGCGcACGg -3'
miRNA:   3'- -GCGGGac-CGaCGaCGCGCUGCGC-UGC- -5'
25390 3' -62.3 NC_005336.1 + 123521 0.66 0.624054
Target:  5'- gGCCCgugacUGGCguggUGgaGCGCGAgCGCaaGACGg -3'
miRNA:   3'- gCGGG-----ACCG----ACgaCGCGCU-GCG--CUGC- -5'
25390 3' -62.3 NC_005336.1 + 103777 0.66 0.624054
Target:  5'- gCGCaCUgcgGGaucgguaccGCUGCGCGACGCGcACa -3'
miRNA:   3'- -GCG-GGa--CCga-------CGACGCGCUGCGC-UGc -5'
25390 3' -62.3 NC_005336.1 + 122600 0.66 0.624054
Target:  5'- cCGCCCgaGGagGCcGCGCcgauGGCGCGACa -3'
miRNA:   3'- -GCGGGa-CCgaCGaCGCG----CUGCGCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.