miRNA display CGI


Results 1 - 20 of 208 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25390 3' -62.3 NC_005336.1 + 68740 1.08 0.000809
Target:  5'- gCGCCCUGGCUGCUGCGCGACGCGACGa -3'
miRNA:   3'- -GCGGGACCGACGACGCGCUGCGCUGC- -5'
25390 3' -62.3 NC_005336.1 + 128038 0.77 0.132574
Target:  5'- gGCgCUGGC-GCUGCGCGGCGCG-Cu -3'
miRNA:   3'- gCGgGACCGaCGACGCGCUGCGCuGc -5'
25390 3' -62.3 NC_005336.1 + 35373 0.77 0.135916
Target:  5'- uGCCCuucUGGCUGgUGCGCGugGUGAa- -3'
miRNA:   3'- gCGGG---ACCGACgACGCGCugCGCUgc -5'
25390 3' -62.3 NC_005336.1 + 130052 0.76 0.153817
Target:  5'- cCGCUgCUGGCUGCcgGCGCGA-GCGugGa -3'
miRNA:   3'- -GCGG-GACCGACGa-CGCGCUgCGCugC- -5'
25390 3' -62.3 NC_005336.1 + 135844 0.76 0.165559
Target:  5'- uGCCgCUGGCggcGCUGCuGCG-CGCGGCGc -3'
miRNA:   3'- gCGG-GACCGa--CGACG-CGCuGCGCUGC- -5'
25390 3' -62.3 NC_005336.1 + 54576 0.76 0.169649
Target:  5'- gCGCUgcgGGCUGCUGCGCucGCGCGACc -3'
miRNA:   3'- -GCGGga-CCGACGACGCGc-UGCGCUGc -5'
25390 3' -62.3 NC_005336.1 + 54178 0.75 0.182464
Target:  5'- gGCCCgGGCgcggucgGCgGCGCcGCGCGACGg -3'
miRNA:   3'- gCGGGaCCGa------CGaCGCGcUGCGCUGC- -5'
25390 3' -62.3 NC_005336.1 + 68266 0.75 0.196129
Target:  5'- gGUCCUGGcCUGggGCGCG-CGCGAUGa -3'
miRNA:   3'- gCGGGACC-GACgaCGCGCuGCGCUGC- -5'
25390 3' -62.3 NC_005336.1 + 74584 0.75 0.200879
Target:  5'- uCGCCgCUGGCgugcgUGCUGCGCGAgGuCGAgGa -3'
miRNA:   3'- -GCGG-GACCG-----ACGACGCGCUgC-GCUgC- -5'
25390 3' -62.3 NC_005336.1 + 65998 0.74 0.205728
Target:  5'- gCGCCgUGGaggcGCUGCGCGGCGUGuGCGc -3'
miRNA:   3'- -GCGGgACCga--CGACGCGCUGCGC-UGC- -5'
25390 3' -62.3 NC_005336.1 + 15691 0.74 0.220368
Target:  5'- gCGUCCgugGGCUcggGCUGUaccgcgacguccaGCGACGCGGCGa -3'
miRNA:   3'- -GCGGGa--CCGA---CGACG-------------CGCUGCGCUGC- -5'
25390 3' -62.3 NC_005336.1 + 135904 0.74 0.220888
Target:  5'- uGCCgCU-GCUGCUgGCGCGGCGCGGgGc -3'
miRNA:   3'- gCGG-GAcCGACGA-CGCGCUGCGCUgC- -5'
25390 3' -62.3 NC_005336.1 + 135904 0.74 0.220888
Target:  5'- uGCCgCU-GCUGCUgGCGCGGCGCGGgGc -3'
miRNA:   3'- gCGG-GAcCGACGA-CGCGCUGCGCUgC- -5'
25390 3' -62.3 NC_005336.1 + 50402 0.74 0.226149
Target:  5'- uCGCCC--GCcgGCUGCGCGGCggGCGACGu -3'
miRNA:   3'- -GCGGGacCGa-CGACGCGCUG--CGCUGC- -5'
25390 3' -62.3 NC_005336.1 + 44227 0.73 0.245973
Target:  5'- gCGCCCgaggagguagagcGGCUGCUggcgcuggaggcGCGCGcGCGCGGCGc -3'
miRNA:   3'- -GCGGGa------------CCGACGA------------CGCGC-UGCGCUGC- -5'
25390 3' -62.3 NC_005336.1 + 42359 0.73 0.248263
Target:  5'- gCGCUCUcGGCcuccaUGCGCGGCGUGGCGg -3'
miRNA:   3'- -GCGGGA-CCGacg--ACGCGCUGCGCUGC- -5'
25390 3' -62.3 NC_005336.1 + 64842 0.73 0.248263
Target:  5'- cCGCCCUcggGGCaagGCgcGCGCGGCGCGcGCGu -3'
miRNA:   3'- -GCGGGA---CCGa--CGa-CGCGCUGCGC-UGC- -5'
25390 3' -62.3 NC_005336.1 + 64901 0.73 0.248263
Target:  5'- gCGCUUggcgaGGCUGUUGCGCGACGCcGAg- -3'
miRNA:   3'- -GCGGGa----CCGACGACGCGCUGCG-CUgc -5'
25390 3' -62.3 NC_005336.1 + 126682 0.73 0.254064
Target:  5'- gGCgCCUGGCUGCaggccgucGCGCGcgugcacggcACGCGGCGc -3'
miRNA:   3'- gCG-GGACCGACGa-------CGCGC----------UGCGCUGC- -5'
25390 3' -62.3 NC_005336.1 + 14900 0.73 0.254064
Target:  5'- gCGCCUccggcgcaguUGGCUGCccGCGCGccGCGCGGCc -3'
miRNA:   3'- -GCGGG----------ACCGACGa-CGCGC--UGCGCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.