miRNA display CGI


Results 21 - 40 of 208 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25390 3' -62.3 NC_005336.1 + 99717 0.66 0.623069
Target:  5'- uGCUCUgcgacgaGGCgGCcGC-CGGCGCGGCGg -3'
miRNA:   3'- gCGGGA-------CCGaCGaCGcGCUGCGCUGC- -5'
25390 3' -62.3 NC_005336.1 + 124894 0.66 0.623069
Target:  5'- gCGCgCgGGCagccaacUGCgccggagGCGCGcGCGCGACGa -3'
miRNA:   3'- -GCGgGaCCG-------ACGa------CGCGC-UGCGCUGC- -5'
25390 3' -62.3 NC_005336.1 + 124251 0.66 0.614208
Target:  5'- gCGaCCC-GcGCcGC-GCGCGGCGCGAUGc -3'
miRNA:   3'- -GC-GGGaC-CGaCGaCGCGCUGCGCUGC- -5'
25390 3' -62.3 NC_005336.1 + 42586 0.66 0.614208
Target:  5'- cCGCCC--GCUGC-GCGUGGuCGUGACc -3'
miRNA:   3'- -GCGGGacCGACGaCGCGCU-GCGCUGc -5'
25390 3' -62.3 NC_005336.1 + 16648 0.66 0.614208
Target:  5'- cCGCCCUccGGCgGCaggaagGCGCagGGCaGCGGCGu -3'
miRNA:   3'- -GCGGGA--CCGaCGa-----CGCG--CUG-CGCUGC- -5'
25390 3' -62.3 NC_005336.1 + 71654 0.66 0.614208
Target:  5'- gGCCCaGGC-GUU-CGCGGCGCcGCGg -3'
miRNA:   3'- gCGGGaCCGaCGAcGCGCUGCGcUGC- -5'
25390 3' -62.3 NC_005336.1 + 51843 0.66 0.614208
Target:  5'- -uUCCUGGUggucuggGUgGCGCG-CGCGGCGg -3'
miRNA:   3'- gcGGGACCGa------CGaCGCGCuGCGCUGC- -5'
25390 3' -62.3 NC_005336.1 + 68292 0.66 0.614208
Target:  5'- aGCCgCUgcgGGCgUGCgugcugGCGCG-CGCGGCa -3'
miRNA:   3'- gCGG-GA---CCG-ACGa-----CGCGCuGCGCUGc -5'
25390 3' -62.3 NC_005336.1 + 128617 0.66 0.614208
Target:  5'- aCGCgCU-GCUGC-GCGCGGCcaucaaccGCGGCGu -3'
miRNA:   3'- -GCGgGAcCGACGaCGCGCUG--------CGCUGC- -5'
25390 3' -62.3 NC_005336.1 + 36224 0.66 0.614208
Target:  5'- gCGCCCgcacGGuCUGCUugacCGCacGCGCGGCGg -3'
miRNA:   3'- -GCGGGa---CC-GACGAc---GCGc-UGCGCUGC- -5'
25390 3' -62.3 NC_005336.1 + 67635 0.66 0.614208
Target:  5'- uCGUCCggcGGCgGCUcGCGCGcCGCG-CGc -3'
miRNA:   3'- -GCGGGa--CCGaCGA-CGCGCuGCGCuGC- -5'
25390 3' -62.3 NC_005336.1 + 97311 0.66 0.608305
Target:  5'- gGCCgUGGCggaGCUGCGgGuGCcuuuugcagucuccuGCGACGg -3'
miRNA:   3'- gCGGgACCGa--CGACGCgC-UG---------------CGCUGC- -5'
25390 3' -62.3 NC_005336.1 + 114059 0.66 0.604373
Target:  5'- -uCCCgauGCUGCUGCGCuccuuccugGACGCGcGCGc -3'
miRNA:   3'- gcGGGac-CGACGACGCG---------CUGCGC-UGC- -5'
25390 3' -62.3 NC_005336.1 + 131097 0.66 0.604373
Target:  5'- cCGCC--GGCUGCaUGCcgcuGCGgaggccGCGCGACGg -3'
miRNA:   3'- -GCGGgaCCGACG-ACG----CGC------UGCGCUGC- -5'
25390 3' -62.3 NC_005336.1 + 129955 0.66 0.604373
Target:  5'- cCGCCaC-GGCUGCUcGcCGCGAgCGCGGa- -3'
miRNA:   3'- -GCGG-GaCCGACGA-C-GCGCU-GCGCUgc -5'
25390 3' -62.3 NC_005336.1 + 115951 0.66 0.604373
Target:  5'- aGCUCgUGGagacCUGuCUGCGCGACGCccucGACu -3'
miRNA:   3'- gCGGG-ACC----GAC-GACGCGCUGCG----CUGc -5'
25390 3' -62.3 NC_005336.1 + 124379 0.66 0.594558
Target:  5'- aCGCgC-GGCUGC-GCGaGAUGCGGCa -3'
miRNA:   3'- -GCGgGaCCGACGaCGCgCUGCGCUGc -5'
25390 3' -62.3 NC_005336.1 + 64194 0.66 0.594558
Target:  5'- gCGCCagacaGGCUGCUGUuCGAC-CGGCu -3'
miRNA:   3'- -GCGGga---CCGACGACGcGCUGcGCUGc -5'
25390 3' -62.3 NC_005336.1 + 74517 0.66 0.594558
Target:  5'- gCGCCUcGGa-GCcGCGCGcccuCGCGACGa -3'
miRNA:   3'- -GCGGGaCCgaCGaCGCGCu---GCGCUGC- -5'
25390 3' -62.3 NC_005336.1 + 123624 0.66 0.594558
Target:  5'- gCGCCaacgUGGCgacGCUGCGgcucuucauCGACGCgGGCGu -3'
miRNA:   3'- -GCGGg---ACCGa--CGACGC---------GCUGCG-CUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.