miRNA display CGI


Results 1 - 20 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25390 5' -56.1 NC_005336.1 + 61148 0.66 0.880231
Target:  5'- cAGCGCagUC-UCGCGCGuCUucGGCGAGa -3'
miRNA:   3'- -UCGCGa-AGaAGCGCGUcGA--CCGCUUc -5'
25390 5' -56.1 NC_005336.1 + 102862 0.66 0.880231
Target:  5'- gGGCGCUaCUUCGagGC-GCUGGCc--- -3'
miRNA:   3'- -UCGCGAaGAAGCg-CGuCGACCGcuuc -5'
25390 5' -56.1 NC_005336.1 + 69194 0.66 0.880231
Target:  5'- -aCGCaggcCUUCGCGCGGUcgccGGUGAGGa -3'
miRNA:   3'- ucGCGaa--GAAGCGCGUCGa---CCGCUUC- -5'
25390 5' -56.1 NC_005336.1 + 71584 0.66 0.87293
Target:  5'- cGCGCgaggccuccUCcgCGCGCAGCguccacGCGGAGg -3'
miRNA:   3'- uCGCGa--------AGaaGCGCGUCGac----CGCUUC- -5'
25390 5' -56.1 NC_005336.1 + 99930 0.66 0.87293
Target:  5'- cGCGCUgaugCG-GCGGCUGcguGCGGAGg -3'
miRNA:   3'- uCGCGAagaaGCgCGUCGAC---CGCUUC- -5'
25390 5' -56.1 NC_005336.1 + 83154 0.66 0.87293
Target:  5'- --gGgaUCUUCGCGUAGUUGGCc--- -3'
miRNA:   3'- ucgCgaAGAAGCGCGUCGACCGcuuc -5'
25390 5' -56.1 NC_005336.1 + 27454 0.66 0.87293
Target:  5'- gAGCGCgcgcgUCcaCGCcaGCGGCUGaGCGAu- -3'
miRNA:   3'- -UCGCGa----AGaaGCG--CGUCGAC-CGCUuc -5'
25390 5' -56.1 NC_005336.1 + 22228 0.66 0.865405
Target:  5'- cAGCGCaga--CGCGCGGCUG-CGAGa -3'
miRNA:   3'- -UCGCGaagaaGCGCGUCGACcGCUUc -5'
25390 5' -56.1 NC_005336.1 + 95995 0.66 0.865405
Target:  5'- cGCGCggC-UCGC-CAGCucUGGCGAGa -3'
miRNA:   3'- uCGCGaaGaAGCGcGUCG--ACCGCUUc -5'
25390 5' -56.1 NC_005336.1 + 121335 0.66 0.865405
Target:  5'- aGGUGC----UCGCGcCGGC-GGCGAGGg -3'
miRNA:   3'- -UCGCGaagaAGCGC-GUCGaCCGCUUC- -5'
25390 5' -56.1 NC_005336.1 + 135896 0.66 0.865405
Target:  5'- cGCGCggCUgcCGCuGCuGCUGGCGcGGc -3'
miRNA:   3'- uCGCGaaGAa-GCG-CGuCGACCGCuUC- -5'
25390 5' -56.1 NC_005336.1 + 96002 0.66 0.865405
Target:  5'- gGGC-CUgaa-CGCGUAGCaGGCGGAGa -3'
miRNA:   3'- -UCGcGAagaaGCGCGUCGaCCGCUUC- -5'
25390 5' -56.1 NC_005336.1 + 135896 0.66 0.865405
Target:  5'- cGCGCggCUgcCGCuGCuGCUGGCGcGGc -3'
miRNA:   3'- uCGCGaaGAa-GCG-CGuCGACCGCuUC- -5'
25390 5' -56.1 NC_005336.1 + 43592 0.66 0.862334
Target:  5'- aAGuCGCUgauagaguccacgC-UCGCGCGcGCUGGCGAc- -3'
miRNA:   3'- -UC-GCGAa------------GaAGCGCGU-CGACCGCUuc -5'
25390 5' -56.1 NC_005336.1 + 130360 0.66 0.857664
Target:  5'- cGCGCUgCUUCcgacugGCGUAcccGCUGcGCGAGGu -3'
miRNA:   3'- uCGCGAaGAAG------CGCGU---CGAC-CGCUUC- -5'
25390 5' -56.1 NC_005336.1 + 85310 0.66 0.857664
Target:  5'- cGGCGagaaCUUC-UCGCGCAGCgacaCGAAGa -3'
miRNA:   3'- -UCGC----GAAGaAGCGCGUCGacc-GCUUC- -5'
25390 5' -56.1 NC_005336.1 + 121822 0.66 0.857664
Target:  5'- gGGCGCU---UCGCGCugGGCUG-CGAGa -3'
miRNA:   3'- -UCGCGAagaAGCGCG--UCGACcGCUUc -5'
25390 5' -56.1 NC_005336.1 + 83666 0.66 0.857664
Target:  5'- cGGCGUUgaggUCGCGCAcGCUGuccGCGAu- -3'
miRNA:   3'- -UCGCGAaga-AGCGCGU-CGAC---CGCUuc -5'
25390 5' -56.1 NC_005336.1 + 55114 0.66 0.857664
Target:  5'- uGCGCagCUUCGUgGUAGCgcGGCGcAAGg -3'
miRNA:   3'- uCGCGaaGAAGCG-CGUCGa-CCGC-UUC- -5'
25390 5' -56.1 NC_005336.1 + 130466 0.66 0.857664
Target:  5'- cGCGC-UCUgcgaggucaCGCGCAGC--GCGGAGg -3'
miRNA:   3'- uCGCGaAGAa--------GCGCGUCGacCGCUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.