miRNA display CGI


Results 1 - 20 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25390 5' -56.1 NC_005336.1 + 6614 0.69 0.704512
Target:  5'- cGGCGCgugcgUCUgcgcccgCGCGCAGCaUcacguccacgagcgcGGCGGAGa -3'
miRNA:   3'- -UCGCGa----AGAa------GCGCGUCG-A---------------CCGCUUC- -5'
25390 5' -56.1 NC_005336.1 + 7779 0.72 0.565941
Target:  5'- cAGCGCgaCUUCGCGCucgcAGUcGGCGAc- -3'
miRNA:   3'- -UCGCGaaGAAGCGCG----UCGaCCGCUuc -5'
25390 5' -56.1 NC_005336.1 + 8997 0.7 0.659208
Target:  5'- cGGCGCggcg-CGCGUAGCUcgccGCGAAGg -3'
miRNA:   3'- -UCGCGaagaaGCGCGUCGAc---CGCUUC- -5'
25390 5' -56.1 NC_005336.1 + 9552 0.66 0.849711
Target:  5'- cGGCGCagCcgCGCGCGGCguucGCGAGc -3'
miRNA:   3'- -UCGCGaaGaaGCGCGUCGac--CGCUUc -5'
25390 5' -56.1 NC_005336.1 + 9983 0.67 0.807043
Target:  5'- cGCGCaccaccagCUUCGCGCAGUcGcCGGAGa -3'
miRNA:   3'- uCGCGaa------GAAGCGCGUCGaCcGCUUC- -5'
25390 5' -56.1 NC_005336.1 + 14377 0.68 0.788771
Target:  5'- cGGCGCgg--UCGCGgGGCagUGGCGGc- -3'
miRNA:   3'- -UCGCGaagaAGCGCgUCG--ACCGCUuc -5'
25390 5' -56.1 NC_005336.1 + 14994 0.68 0.750553
Target:  5'- gAGCGCcgggccUCgggcUCGCGCGGCgcgcgGGCGGc- -3'
miRNA:   3'- -UCGCGa-----AGa---AGCGCGUCGa----CCGCUuc -5'
25390 5' -56.1 NC_005336.1 + 15092 0.69 0.710613
Target:  5'- uGCGCg--UUCGCGCAGCggucGGCGc-- -3'
miRNA:   3'- uCGCGaagAAGCGCGUCGa---CCGCuuc -5'
25390 5' -56.1 NC_005336.1 + 15142 0.67 0.815939
Target:  5'- cGCGCUUUccaGCGCAGCcgcggucGGCGGGu -3'
miRNA:   3'- uCGCGAAGaagCGCGUCGa------CCGCUUc -5'
25390 5' -56.1 NC_005336.1 + 17234 0.78 0.247931
Target:  5'- cGCGUacgagUCgagCGCGCGGCUGGCGAGc -3'
miRNA:   3'- uCGCGa----AGaa-GCGCGUCGACCGCUUc -5'
25390 5' -56.1 NC_005336.1 + 17617 0.66 0.857664
Target:  5'- uGUGCgg---CGCGCAguuGCUGGCGGGc -3'
miRNA:   3'- uCGCGaagaaGCGCGU---CGACCGCUUc -5'
25390 5' -56.1 NC_005336.1 + 20573 0.68 0.750553
Target:  5'- cGGCGCU-----GCGUcauGCUGGCGAGGa -3'
miRNA:   3'- -UCGCGAagaagCGCGu--CGACCGCUUC- -5'
25390 5' -56.1 NC_005336.1 + 20643 0.69 0.700432
Target:  5'- uGGUGagUCUUCGCGCGGgaGGgGGAu -3'
miRNA:   3'- -UCGCgaAGAAGCGCGUCgaCCgCUUc -5'
25390 5' -56.1 NC_005336.1 + 21009 0.7 0.638424
Target:  5'- uGUGCUUCgccgcgaggUCGCGCAGCcGGUGu-- -3'
miRNA:   3'- uCGCGAAGa--------AGCGCGUCGaCCGCuuc -5'
25390 5' -56.1 NC_005336.1 + 21484 0.67 0.83066
Target:  5'- cGCGCUUCauggagguggccgcgCGCGCGGCcgagcucGCGGAGg -3'
miRNA:   3'- uCGCGAAGaa-------------GCGCGUCGac-----CGCUUC- -5'
25390 5' -56.1 NC_005336.1 + 22228 0.66 0.865405
Target:  5'- cAGCGCaga--CGCGCGGCUG-CGAGa -3'
miRNA:   3'- -UCGCGaagaaGCGCGUCGACcGCUUc -5'
25390 5' -56.1 NC_005336.1 + 22746 0.67 0.824661
Target:  5'- cGCGCguggaCGCGCuGCUGGaCGGAa -3'
miRNA:   3'- uCGCGaagaaGCGCGuCGACC-GCUUc -5'
25390 5' -56.1 NC_005336.1 + 25403 0.71 0.576209
Target:  5'- cGCGUUUgUUCGCGC-GCUcGGCGGc- -3'
miRNA:   3'- uCGCGAAgAAGCGCGuCGA-CCGCUuc -5'
25390 5' -56.1 NC_005336.1 + 27454 0.66 0.87293
Target:  5'- gAGCGCgcgcgUCcaCGCcaGCGGCUGaGCGAu- -3'
miRNA:   3'- -UCGCGa----AGaaGCG--CGUCGAC-CGCUuc -5'
25390 5' -56.1 NC_005336.1 + 29607 0.67 0.841555
Target:  5'- gGGCGCUgcgcgugcUCUgCGUGCugaAGCUGcGCGAGc -3'
miRNA:   3'- -UCGCGA--------AGAaGCGCG---UCGAC-CGCUUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.