miRNA display CGI


Results 1 - 20 of 456 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25391 3' -65.6 NC_005336.1 + 109365 0.66 0.485143
Target:  5'- gGCCCGCgacGCGGCGGCcGCCcua--GCCa -3'
miRNA:   3'- aUGGGCG---CGCCGCCG-UGGccgcaCGG- -5'
25391 3' -65.6 NC_005336.1 + 9723 0.66 0.485143
Target:  5'- cUGCCCGCGUuauuucGCGcguccacgcucGCGCCGGCa-GCCa -3'
miRNA:   3'- -AUGGGCGCGc-----CGC-----------CGUGGCCGcaCGG- -5'
25391 3' -65.6 NC_005336.1 + 24356 0.66 0.485143
Target:  5'- aUAUCCGCaCGGCcGCgucgccgucGCCGGCGaccGCCu -3'
miRNA:   3'- -AUGGGCGcGCCGcCG---------UGGCCGCa--CGG- -5'
25391 3' -65.6 NC_005336.1 + 118308 0.66 0.485143
Target:  5'- cGgCCGCGCGcGCGGCcACCuccaugaagcGcGCGUcgGCCa -3'
miRNA:   3'- aUgGGCGCGC-CGCCG-UGG----------C-CGCA--CGG- -5'
25391 3' -65.6 NC_005336.1 + 101418 0.66 0.485143
Target:  5'- gGCaCGgGCGccaGCGGCGCCG-CGUuGCCg -3'
miRNA:   3'- aUGgGCgCGC---CGCCGUGGCcGCA-CGG- -5'
25391 3' -65.6 NC_005336.1 + 82035 0.66 0.485143
Target:  5'- gUGCCCGCGC-GCGGCcUCGa--UGCCg -3'
miRNA:   3'- -AUGGGCGCGcCGCCGuGGCcgcACGG- -5'
25391 3' -65.6 NC_005336.1 + 10531 0.66 0.485143
Target:  5'- gGCgCGgGCGGCGGgGCUaGCGcGUCg -3'
miRNA:   3'- aUGgGCgCGCCGCCgUGGcCGCaCGG- -5'
25391 3' -65.6 NC_005336.1 + 29564 0.66 0.485143
Target:  5'- --gUCGUGuCGGUcucGGCGCUGcGCGUGCUg -3'
miRNA:   3'- augGGCGC-GCCG---CCGUGGC-CGCACGG- -5'
25391 3' -65.6 NC_005336.1 + 84092 0.66 0.485143
Target:  5'- aACCgGCGCGG-GGCacgcaggaGCCGGa--GCCg -3'
miRNA:   3'- aUGGgCGCGCCgCCG--------UGGCCgcaCGG- -5'
25391 3' -65.6 NC_005336.1 + 1032 0.66 0.485143
Target:  5'- -cCCCGCggucgcggGCGGCGGCccgucccCCGGaggGUGCg -3'
miRNA:   3'- auGGGCG--------CGCCGCCGu------GGCCg--CACGg -5'
25391 3' -65.6 NC_005336.1 + 130604 0.66 0.485143
Target:  5'- gAUCCGCGUGGUcuGcGCGCUGGagugggGCCg -3'
miRNA:   3'- aUGGGCGCGCCG--C-CGUGGCCgca---CGG- -5'
25391 3' -65.6 NC_005336.1 + 47344 0.66 0.485143
Target:  5'- gUGCCCgaGCGCGaccucGCGGaCACgaUGGCGcGCCu -3'
miRNA:   3'- -AUGGG--CGCGC-----CGCC-GUG--GCCGCaCGG- -5'
25391 3' -65.6 NC_005336.1 + 65421 0.66 0.485143
Target:  5'- cAUCCGCGUGGagcuGGUgaACCG-CGUGCg -3'
miRNA:   3'- aUGGGCGCGCCg---CCG--UGGCcGCACGg -5'
25391 3' -65.6 NC_005336.1 + 1032 0.66 0.485143
Target:  5'- -cCCCGCggucgcggGCGGCGGCccgucccCCGGaggGUGCg -3'
miRNA:   3'- auGGGCG--------CGCCGCCGu------GGCCg--CACGg -5'
25391 3' -65.6 NC_005336.1 + 105225 0.66 0.485143
Target:  5'- aACCCGCGacgcgcagaUGGCgacgcucauccuGGCGCCGGUgGUGUUc -3'
miRNA:   3'- aUGGGCGC---------GCCG------------CCGUGGCCG-CACGG- -5'
25391 3' -65.6 NC_005336.1 + 49081 0.66 0.485143
Target:  5'- ---gCGCGUGGaCGGCAUCGuugagcacucGCGUGCa -3'
miRNA:   3'- auggGCGCGCC-GCCGUGGC----------CGCACGg -5'
25391 3' -65.6 NC_005336.1 + 127007 0.66 0.485143
Target:  5'- cGCCCGCGgGcGCGGCGaccaCGcGCGagacGUCg -3'
miRNA:   3'- aUGGGCGCgC-CGCCGUg---GC-CGCa---CGG- -5'
25391 3' -65.6 NC_005336.1 + 98676 0.66 0.484245
Target:  5'- cGCCUGCGagGGCGGCAa-GGcCGUgaugaugGCCa -3'
miRNA:   3'- aUGGGCGCg-CCGCCGUggCC-GCA-------CGG- -5'
25391 3' -65.6 NC_005336.1 + 66386 0.66 0.484245
Target:  5'- --aUCGCGCGGauGUACuCGGCcgcugccucgcgcGUGCCg -3'
miRNA:   3'- augGGCGCGCCgcCGUG-GCCG-------------CACGG- -5'
25391 3' -65.6 NC_005336.1 + 89305 0.66 0.482451
Target:  5'- aGCCCGUcuGCGuGCcGCGCgucgccauagacguCGGCGUGCg -3'
miRNA:   3'- aUGGGCG--CGC-CGcCGUG--------------GCCGCACGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.