miRNA display CGI


Results 1 - 20 of 456 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25391 3' -65.6 NC_005336.1 + 68847 1 0.001613
Target:  5'- gUACCCGCGCGGCGGC-CCGGCGUGCCc -3'
miRNA:   3'- -AUGGGCGCGCCGCCGuGGCCGCACGG- -5'
25391 3' -65.6 NC_005336.1 + 105661 0.83 0.02942
Target:  5'- gGCCUGauaGCGGCGGCgAUCGGCGUGCUg -3'
miRNA:   3'- aUGGGCg--CGCCGCCG-UGGCCGCACGG- -5'
25391 3' -65.6 NC_005336.1 + 133979 0.83 0.033482
Target:  5'- cUGgCCGCGCGcGCGGCGCCGGCcucgGCCg -3'
miRNA:   3'- -AUgGGCGCGC-CGCCGUGGCCGca--CGG- -5'
25391 3' -65.6 NC_005336.1 + 99514 0.82 0.037124
Target:  5'- cGgCCGCGCGGCGcGcCGCCGGCGcGCCa -3'
miRNA:   3'- aUgGGCGCGCCGC-C-GUGGCCGCaCGG- -5'
25391 3' -65.6 NC_005336.1 + 104484 0.81 0.048013
Target:  5'- cGCUCGCGCGG-GGCGCUGcGCGUGCUc -3'
miRNA:   3'- aUGGGCGCGCCgCCGUGGC-CGCACGG- -5'
25391 3' -65.6 NC_005336.1 + 9673 0.8 0.053191
Target:  5'- cGCCUGCGCGGCcGCGgCGGCG-GCCu -3'
miRNA:   3'- aUGGGCGCGCCGcCGUgGCCGCaCGG- -5'
25391 3' -65.6 NC_005336.1 + 90679 0.79 0.058911
Target:  5'- --aCCGCGaCGGCGGUguGCCGGCGgcUGCCg -3'
miRNA:   3'- augGGCGC-GCCGCCG--UGGCCGC--ACGG- -5'
25391 3' -65.6 NC_005336.1 + 80657 0.79 0.060432
Target:  5'- cGCCCGCGCcGCGGCGCaCGGCuUGCg -3'
miRNA:   3'- aUGGGCGCGcCGCCGUG-GCCGcACGg -5'
25391 3' -65.6 NC_005336.1 + 120586 0.79 0.063588
Target:  5'- gGCUCGCgGCGGCGaCGCCGGCGgacGCCg -3'
miRNA:   3'- aUGGGCG-CGCCGCcGUGGCCGCa--CGG- -5'
25391 3' -65.6 NC_005336.1 + 68314 0.78 0.072189
Target:  5'- gGCgCGCGCGGCagacgcagaGGCGCCGGUGggcGCCg -3'
miRNA:   3'- aUGgGCGCGCCG---------CCGUGGCCGCa--CGG- -5'
25391 3' -65.6 NC_005336.1 + 62443 0.77 0.083777
Target:  5'- gGCCCGCaccugcacuucccGCGGCGGCGCCuGGUGcUGCg -3'
miRNA:   3'- aUGGGCG-------------CGCCGCCGUGG-CCGC-ACGg -5'
25391 3' -65.6 NC_005336.1 + 16100 0.77 0.083988
Target:  5'- -gUCCGCGUGGUGGUGCagCGGCGUGCg -3'
miRNA:   3'- auGGGCGCGCCGCCGUG--GCCGCACGg -5'
25391 3' -65.6 NC_005336.1 + 14971 0.77 0.083988
Target:  5'- gUACCCGUgcaGCGGCGaGCGCCGaGCGccggGCCu -3'
miRNA:   3'- -AUGGGCG---CGCCGC-CGUGGC-CGCa---CGG- -5'
25391 3' -65.6 NC_005336.1 + 88424 0.77 0.088315
Target:  5'- aGCCUacgGCGCGGCcucGGCGCCGGCGgaggGCa -3'
miRNA:   3'- aUGGG---CGCGCCG---CCGUGGCCGCa---CGg -5'
25391 3' -65.6 NC_005336.1 + 29018 0.77 0.088315
Target:  5'- cACCCGCagccCGGCGGCAgCGGCG-GCUu -3'
miRNA:   3'- aUGGGCGc---GCCGCCGUgGCCGCaCGG- -5'
25391 3' -65.6 NC_005336.1 + 64843 0.77 0.090557
Target:  5'- cGCCCucggggcaagGCGCGcGCGGCGCgCGcGUGUGCCg -3'
miRNA:   3'- aUGGG----------CGCGC-CGCCGUG-GC-CGCACGG- -5'
25391 3' -65.6 NC_005336.1 + 66442 0.77 0.090557
Target:  5'- gGCCacgaGCGCGGCguccucggcgGGCACgCGGCaGUGCCg -3'
miRNA:   3'- aUGGg---CGCGCCG----------CCGUG-GCCG-CACGG- -5'
25391 3' -65.6 NC_005336.1 + 13083 0.77 0.090557
Target:  5'- aGCgCgGUGCaGGCGGCGCC-GCGUGCCg -3'
miRNA:   3'- aUG-GgCGCG-CCGCCGUGGcCGCACGG- -5'
25391 3' -65.6 NC_005336.1 + 135990 0.77 0.092159
Target:  5'- gGCgCGCGCGggcagcggcuggccGCGGCGCUGGCG-GCCg -3'
miRNA:   3'- aUGgGCGCGC--------------CGCCGUGGCCGCaCGG- -5'
25391 3' -65.6 NC_005336.1 + 135990 0.77 0.092159
Target:  5'- gGCgCGCGCGggcagcggcuggccGCGGCGCUGGCG-GCCg -3'
miRNA:   3'- aUGgGCGCGC--------------CGCCGUGGCCGCaCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.