miRNA display CGI


Results 1 - 20 of 456 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25391 3' -65.6 NC_005336.1 + 54178 0.73 0.16337
Target:  5'- gGCCCGgGCgcggucGGCGGCGCCGcGCGacgGCg -3'
miRNA:   3'- aUGGGCgCG------CCGCCGUGGC-CGCa--CGg -5'
25391 3' -65.6 NC_005336.1 + 15009 0.75 0.131335
Target:  5'- gGCUCGCGCGGC-GCGCgGGCG-GCg -3'
miRNA:   3'- aUGGGCGCGCCGcCGUGgCCGCaCGg -5'
25391 3' -65.6 NC_005336.1 + 42211 0.74 0.141312
Target:  5'- -gUUCGCGCGGCGGUACCcGCGcaccgcgGCCg -3'
miRNA:   3'- auGGGCGCGCCGCCGUGGcCGCa------CGG- -5'
25391 3' -65.6 NC_005336.1 + 51990 0.74 0.141312
Target:  5'- gACCUGCGCGaGCuGGCgcagcucuucgACCGGCG-GCCc -3'
miRNA:   3'- aUGGGCGCGC-CG-CCG-----------UGGCCGCaCGG- -5'
25391 3' -65.6 NC_005336.1 + 44081 0.73 0.155693
Target:  5'- --aCCGCGCGGCGcCGCCcagcGCGUGCUg -3'
miRNA:   3'- augGGCGCGCCGCcGUGGc---CGCACGG- -5'
25391 3' -65.6 NC_005336.1 + 131329 0.73 0.15949
Target:  5'- gAUUCGCGCGcugcuucggcGCGGCGCCaGCGUGaCCg -3'
miRNA:   3'- aUGGGCGCGC----------CGCCGUGGcCGCAC-GG- -5'
25391 3' -65.6 NC_005336.1 + 83204 0.73 0.15949
Target:  5'- aGCCagggCGCGCGGacgacgGGCGCgCGGCGcUGCCg -3'
miRNA:   3'- aUGG----GCGCGCCg-----CCGUG-GCCGC-ACGG- -5'
25391 3' -65.6 NC_005336.1 + 52063 0.73 0.162979
Target:  5'- gGCCCGCGCGcgccuucguggacGCGGCACUGGgGcucaUGCg -3'
miRNA:   3'- aUGGGCGCGC-------------CGCCGUGGCCgC----ACGg -5'
25391 3' -65.6 NC_005336.1 + 42137 0.73 0.16337
Target:  5'- gACCCcgagGCGCcGCGGCGCgCGGCcucgcuGUGCCa -3'
miRNA:   3'- aUGGG----CGCGcCGCCGUG-GCCG------CACGG- -5'
25391 3' -65.6 NC_005336.1 + 94950 0.75 0.113306
Target:  5'- cGCCCGCG-GGC-GCGCCGGCG-GCg -3'
miRNA:   3'- aUGGGCGCgCCGcCGUGGCCGCaCGg -5'
25391 3' -65.6 NC_005336.1 + 50953 0.76 0.102601
Target:  5'- -uUCCGCcaugaGCGGCGuGCGCCGGCGcggcgGCCg -3'
miRNA:   3'- auGGGCG-----CGCCGC-CGUGGCCGCa----CGG- -5'
25391 3' -65.6 NC_005336.1 + 3507 0.76 0.095205
Target:  5'- gGCCgGCaGCGGCGGCGCCGcggggcggaagaGCGcGCCg -3'
miRNA:   3'- aUGGgCG-CGCCGCCGUGGC------------CGCaCGG- -5'
25391 3' -65.6 NC_005336.1 + 133979 0.83 0.033482
Target:  5'- cUGgCCGCGCGcGCGGCGCCGGCcucgGCCg -3'
miRNA:   3'- -AUgGGCGCGC-CGCCGUGGCCGca--CGG- -5'
25391 3' -65.6 NC_005336.1 + 9673 0.8 0.053191
Target:  5'- cGCCUGCGCGGCcGCGgCGGCG-GCCu -3'
miRNA:   3'- aUGGGCGCGCCGcCGUgGCCGCaCGG- -5'
25391 3' -65.6 NC_005336.1 + 90679 0.79 0.058911
Target:  5'- --aCCGCGaCGGCGGUguGCCGGCGgcUGCCg -3'
miRNA:   3'- augGGCGC-GCCGCCG--UGGCCGC--ACGG- -5'
25391 3' -65.6 NC_005336.1 + 68314 0.78 0.072189
Target:  5'- gGCgCGCGCGGCagacgcagaGGCGCCGGUGggcGCCg -3'
miRNA:   3'- aUGgGCGCGCCG---------CCGUGGCCGCa--CGG- -5'
25391 3' -65.6 NC_005336.1 + 14971 0.77 0.083988
Target:  5'- gUACCCGUgcaGCGGCGaGCGCCGaGCGccggGCCu -3'
miRNA:   3'- -AUGGGCG---CGCCGC-CGUGGC-CGCa---CGG- -5'
25391 3' -65.6 NC_005336.1 + 29018 0.77 0.088315
Target:  5'- cACCCGCagccCGGCGGCAgCGGCG-GCUu -3'
miRNA:   3'- aUGGGCGc---GCCGCCGUgGCCGCaCGG- -5'
25391 3' -65.6 NC_005336.1 + 64843 0.77 0.090557
Target:  5'- cGCCCucggggcaagGCGCGcGCGGCGCgCGcGUGUGCCg -3'
miRNA:   3'- aUGGG----------CGCGC-CGCCGUG-GC-CGCACGG- -5'
25391 3' -65.6 NC_005336.1 + 135990 0.77 0.092159
Target:  5'- gGCgCGCGCGggcagcggcuggccGCGGCGCUGGCG-GCCg -3'
miRNA:   3'- aUGgGCGCGC--------------CGCCGUGGCCGCaCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.